Hb_002272_250

Information

Type -
Description -
Location Contig2272: 150222-155918
Sequence    

Annotation

kegg
ID rcu:RCOM_1430310
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002512332.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9S733
description Pentatricopeptide repeat-containing protein At2g40240, mitochondrial OS=Arabidopsis thaliana GN=At2g40240 PE=2 SV=1
trembl
ID B9RF13
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1430310 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23698: 150272-157053 , PASA_asmbl_23699: 154998-155256
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002272_250 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_000032_570 0.0666037184 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KELP [Jatropha curcas]
3 Hb_005527_050 0.0672009445 - - PREDICTED: uncharacterized protein LOC105643024 [Jatropha curcas]
4 Hb_011794_090 0.0685081442 - - PREDICTED: uncharacterized protein LOC105642993 [Jatropha curcas]
5 Hb_003392_040 0.0687033257 - - PREDICTED: D-aminoacyl-tRNA deacylase [Jatropha curcas]
6 Hb_000017_120 0.0688987148 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
7 Hb_150069_020 0.0710092029 - - PREDICTED: ribosome biogenesis regulatory protein homolog isoform X1 [Jatropha curcas]
8 Hb_004204_070 0.0732250356 - - PREDICTED: 40S ribosomal protein S19-3 [Jatropha curcas]
9 Hb_004223_130 0.0739146274 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003728_020 0.074248168 - - conserved hypothetical protein [Ricinus communis]
11 Hb_012340_030 0.074556339 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Jatropha curcas]
12 Hb_002762_060 0.0751831912 - - PREDICTED: diphthine methyltransferase homolog [Jatropha curcas]
13 Hb_001776_110 0.0779738891 - - PREDICTED: pentatricopeptide repeat-containing protein At1g07590, mitochondrial [Jatropha curcas]
14 Hb_001030_120 0.0797308195 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
15 Hb_003540_040 0.080212698 - - hypothetical protein JCGZ_20979 [Jatropha curcas]
16 Hb_003688_100 0.0816970995 - - Uncharacterized protein TCM_002515 [Theobroma cacao]
17 Hb_000000_080 0.0820930588 - - lipoate-protein ligase B, putative [Ricinus communis]
18 Hb_000853_110 0.0821917053 - - PREDICTED: 60S ribosomal protein L19-1 [Jatropha curcas]
19 Hb_000107_390 0.0830410934 - - PREDICTED: uncharacterized protein LOC100245962 [Vitis vinifera]
20 Hb_004722_060 0.0833893876 - - PREDICTED: protein CLP1 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_002272_250 Hb_002272_250 Hb_000032_570 Hb_000032_570 Hb_002272_250--Hb_000032_570 Hb_005527_050 Hb_005527_050 Hb_002272_250--Hb_005527_050 Hb_011794_090 Hb_011794_090 Hb_002272_250--Hb_011794_090 Hb_003392_040 Hb_003392_040 Hb_002272_250--Hb_003392_040 Hb_000017_120 Hb_000017_120 Hb_002272_250--Hb_000017_120 Hb_150069_020 Hb_150069_020 Hb_002272_250--Hb_150069_020 Hb_000032_570--Hb_003392_040 Hb_001030_120 Hb_001030_120 Hb_000032_570--Hb_001030_120 Hb_028872_140 Hb_028872_140 Hb_000032_570--Hb_028872_140 Hb_000169_010 Hb_000169_010 Hb_000032_570--Hb_000169_010 Hb_003728_020 Hb_003728_020 Hb_000032_570--Hb_003728_020 Hb_006692_030 Hb_006692_030 Hb_000032_570--Hb_006692_030 Hb_005527_050--Hb_003728_020 Hb_003453_020 Hb_003453_020 Hb_005527_050--Hb_003453_020 Hb_005928_060 Hb_005928_060 Hb_005527_050--Hb_005928_060 Hb_000905_190 Hb_000905_190 Hb_005527_050--Hb_000905_190 Hb_005527_050--Hb_150069_020 Hb_003688_100 Hb_003688_100 Hb_011794_090--Hb_003688_100 Hb_004204_070 Hb_004204_070 Hb_011794_090--Hb_004204_070 Hb_000107_050 Hb_000107_050 Hb_011794_090--Hb_000107_050 Hb_004722_060 Hb_004722_060 Hb_011794_090--Hb_004722_060 Hb_000977_130 Hb_000977_130 Hb_011794_090--Hb_000977_130 Hb_003058_130 Hb_003058_130 Hb_003392_040--Hb_003058_130 Hb_003392_040--Hb_000169_010 Hb_011689_080 Hb_011689_080 Hb_003392_040--Hb_011689_080 Hb_001377_290 Hb_001377_290 Hb_003392_040--Hb_001377_290 Hb_000720_120 Hb_000720_120 Hb_003392_040--Hb_000720_120 Hb_001006_170 Hb_001006_170 Hb_000017_120--Hb_001006_170 Hb_000017_120--Hb_001030_120 Hb_012340_030 Hb_012340_030 Hb_000017_120--Hb_012340_030 Hb_004223_130 Hb_004223_130 Hb_000017_120--Hb_004223_130 Hb_002631_050 Hb_002631_050 Hb_000017_120--Hb_002631_050 Hb_150069_020--Hb_003728_020 Hb_076787_010 Hb_076787_010 Hb_150069_020--Hb_076787_010 Hb_150069_020--Hb_003453_020 Hb_002249_140 Hb_002249_140 Hb_150069_020--Hb_002249_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.9518 3.12353 3.08488 2.10405 9.52368 9.76668
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.99941 9.68605 7.06613 4.50666 1.57399

CAGE analysis