Hb_000720_120

Information

Type -
Description -
Location Contig720: 154740-160536
Sequence    

Annotation

kegg
ID pop:POPTR_0001s09040g
description POPTRDRAFT_640520; transcription initiation factor-related family protein
nr
ID XP_012086956.1
description PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
swissprot
ID Q54KJ8
description General transcription factor IIE subunit 2 OS=Dictyostelium discoideum GN=gtf2e2 PE=3 SV=1
trembl
ID A0A067JRL8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20629 PE=4 SV=1
Gene Ontology
ID GO:0006367
description general transcription factor iie subunit 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55635: 154730-160489
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000720_120 0.0 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
2 Hb_000169_010 0.0553780569 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
3 Hb_001138_050 0.0602442195 - - hypothetical protein JCGZ_15696 [Jatropha curcas]
4 Hb_003392_040 0.0604295003 - - PREDICTED: D-aminoacyl-tRNA deacylase [Jatropha curcas]
5 Hb_000613_140 0.061864156 - - PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic [Jatropha curcas]
6 Hb_000638_080 0.0648593959 - - PREDICTED: uncharacterized protein LOC105632765 [Jatropha curcas]
7 Hb_000032_570 0.064996105 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KELP [Jatropha curcas]
8 Hb_004223_280 0.0672797602 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 6 [Jatropha curcas]
9 Hb_002762_060 0.0706922708 - - PREDICTED: diphthine methyltransferase homolog [Jatropha curcas]
10 Hb_011689_080 0.0710655112 - - PREDICTED: uncharacterized protein LOC105631867 [Jatropha curcas]
11 Hb_003540_040 0.0716448454 - - hypothetical protein JCGZ_20979 [Jatropha curcas]
12 Hb_005993_040 0.0717106168 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4 [Jatropha curcas]
13 Hb_001377_290 0.0731623914 - - PREDICTED: cyclic pyranopterin monophosphate synthase accessory protein, mitochondrial [Jatropha curcas]
14 Hb_063090_010 0.073693902 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
15 Hb_000205_160 0.0738078014 - - Peroxisome biogenesis protein 12 [Morus notabilis]
16 Hb_000371_080 0.0751317183 - - ubiquitin-conjugating enzyme m, putative [Ricinus communis]
17 Hb_000398_180 0.0757162499 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
18 Hb_001135_050 0.0783115324 - - PREDICTED: nitrilase-like protein 2 isoform X1 [Jatropha curcas]
19 Hb_002685_190 0.0795604243 transcription factor TF Family: SET PREDICTED: probable zinc metalloprotease EGY1, chloroplastic [Jatropha curcas]
20 Hb_003126_080 0.0795844358 - - PREDICTED: uncharacterized protein LOC105647117 [Jatropha curcas]

Gene co-expression network

sample Hb_000720_120 Hb_000720_120 Hb_000169_010 Hb_000169_010 Hb_000720_120--Hb_000169_010 Hb_001138_050 Hb_001138_050 Hb_000720_120--Hb_001138_050 Hb_003392_040 Hb_003392_040 Hb_000720_120--Hb_003392_040 Hb_000613_140 Hb_000613_140 Hb_000720_120--Hb_000613_140 Hb_000638_080 Hb_000638_080 Hb_000720_120--Hb_000638_080 Hb_000032_570 Hb_000032_570 Hb_000720_120--Hb_000032_570 Hb_000169_010--Hb_003392_040 Hb_005539_030 Hb_005539_030 Hb_000169_010--Hb_005539_030 Hb_007254_040 Hb_007254_040 Hb_000169_010--Hb_007254_040 Hb_000169_010--Hb_000032_570 Hb_001135_050 Hb_001135_050 Hb_000169_010--Hb_001135_050 Hb_000398_180 Hb_000398_180 Hb_001138_050--Hb_000398_180 Hb_001377_290 Hb_001377_290 Hb_001138_050--Hb_001377_290 Hb_005357_030 Hb_005357_030 Hb_001138_050--Hb_005357_030 Hb_001259_090 Hb_001259_090 Hb_001138_050--Hb_001259_090 Hb_019253_020 Hb_019253_020 Hb_001138_050--Hb_019253_020 Hb_003058_130 Hb_003058_130 Hb_003392_040--Hb_003058_130 Hb_011689_080 Hb_011689_080 Hb_003392_040--Hb_011689_080 Hb_003392_040--Hb_000032_570 Hb_003392_040--Hb_001377_290 Hb_003020_230 Hb_003020_230 Hb_000613_140--Hb_003020_230 Hb_004223_280 Hb_004223_280 Hb_000613_140--Hb_004223_280 Hb_000926_250 Hb_000926_250 Hb_000613_140--Hb_000926_250 Hb_003615_010 Hb_003615_010 Hb_000613_140--Hb_003615_010 Hb_000510_130 Hb_000510_130 Hb_000613_140--Hb_000510_130 Hb_000638_080--Hb_001135_050 Hb_000638_080--Hb_005539_030 Hb_000638_080--Hb_000169_010 Hb_004048_070 Hb_004048_070 Hb_000638_080--Hb_004048_070 Hb_001221_410 Hb_001221_410 Hb_000638_080--Hb_001221_410 Hb_001030_120 Hb_001030_120 Hb_000032_570--Hb_001030_120 Hb_028872_140 Hb_028872_140 Hb_000032_570--Hb_028872_140 Hb_003728_020 Hb_003728_020 Hb_000032_570--Hb_003728_020 Hb_006692_030 Hb_006692_030 Hb_000032_570--Hb_006692_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.1177 16.4414 11.1586 10.2492 32.475 38.8012
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
47.9025 42.0727 25.9565 20.8682 8.48689

CAGE analysis