Hb_003615_010

Information

Type -
Description -
Location Contig3615: 39683-42797
Sequence    

Annotation

kegg
ID rcu:RCOM_1544580
description 60S ribosomal protein L8, putative
nr
ID XP_002515688.1
description 60S ribosomal protein L8, putative [Ricinus communis]
swissprot
ID P29766
description 60S ribosomal protein L8 OS=Solanum lycopersicum GN=RPL8 PE=2 SV=1
trembl
ID B9RPL9
description 60S ribosomal protein L8, putative OS=Ricinus communis GN=RCOM_1544580 PE=3 SV=1
Gene Ontology
ID GO:0015934
description 60s ribosomal protein l8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37185: 39760-42787 , PASA_asmbl_37186: 40262-42346
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003615_010 0.0 - - 60S ribosomal protein L8, putative [Ricinus communis]
2 Hb_001048_020 0.0619563574 - - PREDICTED: E3 ubiquitin-protein ligase FANCL isoform X1 [Jatropha curcas]
3 Hb_061090_010 0.0627890098 - - RAN BINDING protein 1 [Populus trichocarpa]
4 Hb_001226_160 0.0666092963 - - PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform X1 [Jatropha curcas]
5 Hb_172632_090 0.0672168291 - - ribosomal pseudouridine synthase, putative [Ricinus communis]
6 Hb_000613_140 0.0672241523 - - PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic [Jatropha curcas]
7 Hb_000926_250 0.0692201775 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
8 Hb_000030_300 0.0702812979 - - Thioredoxin, putative [Ricinus communis]
9 Hb_002026_180 0.0724549236 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
10 Hb_001758_100 0.0749802714 - - basic helix-loop-helix-containing protein, putative [Ricinus communis]
11 Hb_039946_020 0.0751270514 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003766_040 0.0757163319 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_008900_010 0.0759146924 - - PREDICTED: uncharacterized protein LOC105773666 [Gossypium raimondii]
14 Hb_000510_130 0.0762196914 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
15 Hb_000205_160 0.0769887891 - - Peroxisome biogenesis protein 12 [Morus notabilis]
16 Hb_000003_160 0.0773273216 - - PREDICTED: mitochondrial import receptor subunit TOM40-1 [Jatropha curcas]
17 Hb_033834_040 0.0780407982 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000120_470 0.0794367271 - - hypothetical protein VITISV_017372 [Vitis vinifera]
19 Hb_003092_040 0.0796830959 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 isoform X2 [Pyrus x bretschneideri]
20 Hb_001377_290 0.0799279269 - - PREDICTED: cyclic pyranopterin monophosphate synthase accessory protein, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_003615_010 Hb_003615_010 Hb_001048_020 Hb_001048_020 Hb_003615_010--Hb_001048_020 Hb_061090_010 Hb_061090_010 Hb_003615_010--Hb_061090_010 Hb_001226_160 Hb_001226_160 Hb_003615_010--Hb_001226_160 Hb_172632_090 Hb_172632_090 Hb_003615_010--Hb_172632_090 Hb_000613_140 Hb_000613_140 Hb_003615_010--Hb_000613_140 Hb_000926_250 Hb_000926_250 Hb_003615_010--Hb_000926_250 Hb_001048_020--Hb_000613_140 Hb_001048_020--Hb_001226_160 Hb_000510_130 Hb_000510_130 Hb_001048_020--Hb_000510_130 Hb_001252_110 Hb_001252_110 Hb_001048_020--Hb_001252_110 Hb_023732_070 Hb_023732_070 Hb_001048_020--Hb_023732_070 Hb_001818_090 Hb_001818_090 Hb_061090_010--Hb_001818_090 Hb_002026_180 Hb_002026_180 Hb_061090_010--Hb_002026_180 Hb_003996_020 Hb_003996_020 Hb_061090_010--Hb_003996_020 Hb_019280_040 Hb_019280_040 Hb_061090_010--Hb_019280_040 Hb_007441_120 Hb_007441_120 Hb_061090_010--Hb_007441_120 Hb_000656_400 Hb_000656_400 Hb_001226_160--Hb_000656_400 Hb_000056_200 Hb_000056_200 Hb_001226_160--Hb_000056_200 Hb_002660_080 Hb_002660_080 Hb_001226_160--Hb_002660_080 Hb_096563_010 Hb_096563_010 Hb_001226_160--Hb_096563_010 Hb_002226_070 Hb_002226_070 Hb_001226_160--Hb_002226_070 Hb_003126_080 Hb_003126_080 Hb_172632_090--Hb_003126_080 Hb_005993_040 Hb_005993_040 Hb_172632_090--Hb_005993_040 Hb_000251_130 Hb_000251_130 Hb_172632_090--Hb_000251_130 Hb_172632_090--Hb_001226_160 Hb_002311_350 Hb_002311_350 Hb_172632_090--Hb_002311_350 Hb_000720_120 Hb_000720_120 Hb_000613_140--Hb_000720_120 Hb_003020_230 Hb_003020_230 Hb_000613_140--Hb_003020_230 Hb_004223_280 Hb_004223_280 Hb_000613_140--Hb_004223_280 Hb_000613_140--Hb_000926_250 Hb_000613_140--Hb_000510_130 Hb_000007_100 Hb_000007_100 Hb_000926_250--Hb_000007_100 Hb_033834_040 Hb_033834_040 Hb_000926_250--Hb_033834_040 Hb_001604_080 Hb_001604_080 Hb_000926_250--Hb_001604_080 Hb_000926_250--Hb_002226_070 Hb_002284_240 Hb_002284_240 Hb_000926_250--Hb_002284_240 Hb_063716_050 Hb_063716_050 Hb_000926_250--Hb_063716_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
115.143 64.6958 62.7139 57.6429 101.879 168.097
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
132.454 170.733 137.763 103.722 32.6506

CAGE analysis