Hb_002226_070

Information

Type -
Description -
Location Contig2226: 56358-67435
Sequence    

Annotation

kegg
ID gmx:100809589
description uncharacterized LOC100809589
nr
ID XP_012081307.1
description PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas]
swissprot
ID Q67XL4
description Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabidopsis thaliana GN=At3g25440 PE=2 SV=1
trembl
ID A0A067LDM8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09572 PE=4 SV=1
Gene Ontology
ID GO:0003723
description uncharacterized crm domain-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23057: 56378-57375 , PASA_asmbl_23058: 59152-60489
cDNA
(Sanger)
(ID:Location)		 051_F20r.ab1: 54791-55523

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002226_070 0.0 - - PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas]
2 Hb_004032_010 0.0506768902 - - PREDICTED: uncharacterized protein LOC105635123 [Jatropha curcas]
3 Hb_033834_040 0.0512267785 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001489_060 0.058690686 - - PREDICTED: uncharacterized protein LOC105649778 isoform X2 [Jatropha curcas]
5 Hb_000926_250 0.0608429811 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
6 Hb_000056_200 0.0617386723 - - 40S ribosomal S9-2 -like protein [Gossypium arboreum]
7 Hb_000059_370 0.0627294779 - - PREDICTED: U6 snRNA phosphodiesterase [Jatropha curcas]
8 Hb_000243_030 0.0659598095 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
9 Hb_001226_160 0.0664049864 - - PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform X1 [Jatropha curcas]
10 Hb_003050_080 0.0666575752 - - 40S ribosomal protein S14, putative [Ricinus communis]
11 Hb_002006_020 0.0684930405 - - PREDICTED: uncharacterized protein LOC105650638 [Jatropha curcas]
12 Hb_002284_240 0.0688712448 - - PREDICTED: coiled-coil domain-containing protein 115 isoform X3 [Jatropha curcas]
13 Hb_002660_080 0.0688761471 - - 60S ribosomal protein L12A [Hevea brasiliensis]
14 Hb_159809_020 0.069429736 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_006031_020 0.0699527578 - - PREDICTED: protein FLX-like 1 isoform X1 [Jatropha curcas]
16 Hb_063716_050 0.0701434069 - - PREDICTED: uncharacterized protein LOC105634866 [Jatropha curcas]
17 Hb_001828_190 0.0704064224 - - PREDICTED: phosducin-like protein 3 [Prunus mume]
18 Hb_000007_100 0.0710676731 - - PREDICTED: uncharacterized protein LOC105640717 [Jatropha curcas]
19 Hb_003929_250 0.0719585348 - - PREDICTED: proteasome assembly chaperone 4 [Jatropha curcas]
20 Hb_000690_180 0.0723065383 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 13 homolog B [Jatropha curcas]

Gene co-expression network

sample Hb_002226_070 Hb_002226_070 Hb_004032_010 Hb_004032_010 Hb_002226_070--Hb_004032_010 Hb_033834_040 Hb_033834_040 Hb_002226_070--Hb_033834_040 Hb_001489_060 Hb_001489_060 Hb_002226_070--Hb_001489_060 Hb_000926_250 Hb_000926_250 Hb_002226_070--Hb_000926_250 Hb_000056_200 Hb_000056_200 Hb_002226_070--Hb_000056_200 Hb_000059_370 Hb_000059_370 Hb_002226_070--Hb_000059_370 Hb_000656_170 Hb_000656_170 Hb_004032_010--Hb_000656_170 Hb_004032_010--Hb_033834_040 Hb_000690_180 Hb_000690_180 Hb_004032_010--Hb_000690_180 Hb_005045_060 Hb_005045_060 Hb_004032_010--Hb_005045_060 Hb_003108_020 Hb_003108_020 Hb_004032_010--Hb_003108_020 Hb_000103_090 Hb_000103_090 Hb_033834_040--Hb_000103_090 Hb_033834_040--Hb_000926_250 Hb_002183_090 Hb_002183_090 Hb_033834_040--Hb_002183_090 Hb_159809_020 Hb_159809_020 Hb_033834_040--Hb_159809_020 Hb_063716_050 Hb_063716_050 Hb_001489_060--Hb_063716_050 Hb_003050_080 Hb_003050_080 Hb_001489_060--Hb_003050_080 Hb_002006_020 Hb_002006_020 Hb_001489_060--Hb_002006_020 Hb_001821_010 Hb_001821_010 Hb_001489_060--Hb_001821_010 Hb_001489_060--Hb_000056_200 Hb_000007_100 Hb_000007_100 Hb_000926_250--Hb_000007_100 Hb_001604_080 Hb_001604_080 Hb_000926_250--Hb_001604_080 Hb_002284_240 Hb_002284_240 Hb_000926_250--Hb_002284_240 Hb_000926_250--Hb_063716_050 Hb_000056_200--Hb_001821_010 Hb_000920_180 Hb_000920_180 Hb_000056_200--Hb_000920_180 Hb_000056_200--Hb_003050_080 Hb_000243_030 Hb_000243_030 Hb_000056_200--Hb_000243_030 Hb_000056_200--Hb_063716_050 Hb_002044_080 Hb_002044_080 Hb_000056_200--Hb_002044_080 Hb_001105_030 Hb_001105_030 Hb_000059_370--Hb_001105_030 Hb_000479_090 Hb_000479_090 Hb_000059_370--Hb_000479_090 Hb_000384_100 Hb_000384_100 Hb_000059_370--Hb_000384_100 Hb_002534_150 Hb_002534_150 Hb_000059_370--Hb_002534_150 Hb_000059_370--Hb_001821_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.87894 2.79294 3.03692 3.9725 6.45847 6.91112
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.57998 11.613 6.54323 4.27016 2.81044

CAGE analysis