Hb_004032_010

Information

Type -
Description -
Location Contig4032: 1482-4321
Sequence    

Annotation

kegg
ID rcu:RCOM_1602850
description hypothetical protein
nr
ID XP_012073502.1
description PREDICTED: uncharacterized protein LOC105635123 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KKQ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07988 PE=4 SV=1
Gene Ontology
ID GO:0005634
description organellar dna-binding protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39973: 1381-12914
cDNA
(Sanger)
(ID:Location)		 007_K11.ab1: 1381-12840 , 046_A10.ab1: 1446-12878

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004032_010 0.0 - - PREDICTED: uncharacterized protein LOC105635123 [Jatropha curcas]
2 Hb_002226_070 0.0506768902 - - PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas]
3 Hb_000656_170 0.0531298932 - - lsm1, putative [Ricinus communis]
4 Hb_033834_040 0.0657319242 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000690_180 0.0660124613 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 13 homolog B [Jatropha curcas]
6 Hb_005045_060 0.0662531785 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial [Jatropha curcas]
7 Hb_003108_020 0.0702957465 - - PREDICTED: transmembrane protein 18 [Jatropha curcas]
8 Hb_002207_110 0.070299939 - - -
9 Hb_000926_250 0.0727002024 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
10 Hb_012799_160 0.0750828192 - - PREDICTED: ADP-ribosylation factor-related protein 1-like [Jatropha curcas]
11 Hb_002284_240 0.0752867891 - - PREDICTED: coiled-coil domain-containing protein 115 isoform X3 [Jatropha curcas]
12 Hb_000331_450 0.0763975732 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]
13 Hb_009793_010 0.077796294 - - hypothetical protein JCGZ_17222 [Jatropha curcas]
14 Hb_001828_190 0.0789500818 - - PREDICTED: phosducin-like protein 3 [Prunus mume]
15 Hb_159809_020 0.0789648699 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_000172_320 0.0795157073 - - PREDICTED: ribosome biogenesis protein TSR3 homolog [Jatropha curcas]
17 Hb_000007_100 0.0798959833 - - PREDICTED: uncharacterized protein LOC105640717 [Jatropha curcas]
18 Hb_000707_030 0.0799155195 - - PREDICTED: probable proteasome inhibitor [Vitis vinifera]
19 Hb_000059_370 0.0803849566 - - PREDICTED: U6 snRNA phosphodiesterase [Jatropha curcas]
20 Hb_000085_320 0.0811064685 - - Uncharacterized protein TCM_030749 [Theobroma cacao]

Gene co-expression network

sample Hb_004032_010 Hb_004032_010 Hb_002226_070 Hb_002226_070 Hb_004032_010--Hb_002226_070 Hb_000656_170 Hb_000656_170 Hb_004032_010--Hb_000656_170 Hb_033834_040 Hb_033834_040 Hb_004032_010--Hb_033834_040 Hb_000690_180 Hb_000690_180 Hb_004032_010--Hb_000690_180 Hb_005045_060 Hb_005045_060 Hb_004032_010--Hb_005045_060 Hb_003108_020 Hb_003108_020 Hb_004032_010--Hb_003108_020 Hb_002226_070--Hb_033834_040 Hb_001489_060 Hb_001489_060 Hb_002226_070--Hb_001489_060 Hb_000926_250 Hb_000926_250 Hb_002226_070--Hb_000926_250 Hb_000056_200 Hb_000056_200 Hb_002226_070--Hb_000056_200 Hb_000059_370 Hb_000059_370 Hb_002226_070--Hb_000059_370 Hb_000656_170--Hb_003108_020 Hb_000102_020 Hb_000102_020 Hb_000656_170--Hb_000102_020 Hb_009051_030 Hb_009051_030 Hb_000656_170--Hb_009051_030 Hb_007441_040 Hb_007441_040 Hb_000656_170--Hb_007441_040 Hb_000479_190 Hb_000479_190 Hb_000656_170--Hb_000479_190 Hb_000103_090 Hb_000103_090 Hb_033834_040--Hb_000103_090 Hb_033834_040--Hb_000926_250 Hb_002183_090 Hb_002183_090 Hb_033834_040--Hb_002183_090 Hb_159809_020 Hb_159809_020 Hb_033834_040--Hb_159809_020 Hb_001369_640 Hb_001369_640 Hb_000690_180--Hb_001369_640 Hb_000690_180--Hb_002226_070 Hb_000690_180--Hb_005045_060 Hb_003929_250 Hb_003929_250 Hb_000690_180--Hb_003929_250 Hb_000690_180--Hb_000056_200 Hb_001341_090 Hb_001341_090 Hb_005045_060--Hb_001341_090 Hb_000815_320 Hb_000815_320 Hb_005045_060--Hb_000815_320 Hb_024071_020 Hb_024071_020 Hb_005045_060--Hb_024071_020 Hb_005045_060--Hb_001489_060 Hb_002811_260 Hb_002811_260 Hb_005045_060--Hb_002811_260 Hb_000002_380 Hb_000002_380 Hb_003108_020--Hb_000002_380 Hb_003502_090 Hb_003502_090 Hb_003108_020--Hb_003502_090 Hb_002182_080 Hb_002182_080 Hb_003108_020--Hb_002182_080 Hb_003108_020--Hb_000479_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.3109 9.75918 13.1044 22.5883 23.0936 30.4548
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.4938 47.9231 26.7172 15.7253 10.4176

CAGE analysis