Hb_024071_020

Information

Type -
Description -
Location Contig24071: 8440-12099
Sequence    

Annotation

kegg
ID rcu:RCOM_0533190
description hypothetical protein
nr
ID XP_012078531.1
description PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LMV6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17346 PE=4 SV=1
Gene Ontology
ID GO:0043231
description protein translocase subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25225: 8988-12359
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024071_020 0.0 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
2 Hb_001140_370 0.049838215 - - PREDICTED: uncharacterized protein LOC105648463 [Jatropha curcas]
3 Hb_000610_050 0.0532297871 - - skp1, putative [Ricinus communis]
4 Hb_003126_050 0.0669529306 - - PREDICTED: cell cycle checkpoint protein RAD17 isoform X1 [Jatropha curcas]
5 Hb_000020_060 0.0678435688 - - PREDICTED: trafficking protein particle complex subunit 4 [Jatropha curcas]
6 Hb_000059_330 0.0681728899 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
7 Hb_003428_030 0.0690781154 - - tRNA, putative [Ricinus communis]
8 Hb_004116_190 0.0709693657 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
9 Hb_004800_230 0.0724085095 - - PREDICTED: MIP18 family protein At1g68310 [Jatropha curcas]
10 Hb_002893_050 0.0727757855 - - hypothetical protein POPTR_0006s26510g [Populus trichocarpa]
11 Hb_000815_320 0.0732651452 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X2 [Jatropha curcas]
12 Hb_005045_060 0.074038562 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial [Jatropha curcas]
13 Hb_172426_040 0.0748361687 - - PREDICTED: ELL-associated factor 1 [Jatropha curcas]
14 Hb_007875_030 0.07528469 - - PREDICTED: tubulin-folding cofactor B-like [Jatropha curcas]
15 Hb_001534_120 0.0756054743 - - PREDICTED: vacuolar protein-sorting-associated protein 37 homolog 1 [Gossypium raimondii]
16 Hb_003918_010 0.0757586893 - - PREDICTED: biotin--protein ligase 2-like [Jatropha curcas]
17 Hb_006059_050 0.0763239336 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
18 Hb_128048_010 0.0763502097 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
19 Hb_011344_210 0.0766844008 - - PREDICTED: probable calcium-binding protein CML13 [Jatropha curcas]
20 Hb_001195_480 0.077522618 - - cop9 complex subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_024071_020 Hb_024071_020 Hb_001140_370 Hb_001140_370 Hb_024071_020--Hb_001140_370 Hb_000610_050 Hb_000610_050 Hb_024071_020--Hb_000610_050 Hb_003126_050 Hb_003126_050 Hb_024071_020--Hb_003126_050 Hb_000020_060 Hb_000020_060 Hb_024071_020--Hb_000020_060 Hb_000059_330 Hb_000059_330 Hb_024071_020--Hb_000059_330 Hb_003428_030 Hb_003428_030 Hb_024071_020--Hb_003428_030 Hb_001016_030 Hb_001016_030 Hb_001140_370--Hb_001016_030 Hb_001157_020 Hb_001157_020 Hb_001140_370--Hb_001157_020 Hb_003918_010 Hb_003918_010 Hb_001140_370--Hb_003918_010 Hb_006059_050 Hb_006059_050 Hb_001140_370--Hb_006059_050 Hb_172426_040 Hb_172426_040 Hb_001140_370--Hb_172426_040 Hb_027472_040 Hb_027472_040 Hb_000610_050--Hb_027472_040 Hb_002893_050 Hb_002893_050 Hb_000610_050--Hb_002893_050 Hb_007875_030 Hb_007875_030 Hb_000610_050--Hb_007875_030 Hb_000796_210 Hb_000796_210 Hb_000610_050--Hb_000796_210 Hb_000342_100 Hb_000342_100 Hb_000610_050--Hb_000342_100 Hb_003417_020 Hb_003417_020 Hb_003126_050--Hb_003417_020 Hb_000640_240 Hb_000640_240 Hb_003126_050--Hb_000640_240 Hb_003092_040 Hb_003092_040 Hb_003126_050--Hb_003092_040 Hb_000041_270 Hb_000041_270 Hb_003126_050--Hb_000041_270 Hb_096563_010 Hb_096563_010 Hb_003126_050--Hb_096563_010 Hb_007691_030 Hb_007691_030 Hb_003126_050--Hb_007691_030 Hb_002995_020 Hb_002995_020 Hb_000020_060--Hb_002995_020 Hb_004116_190 Hb_004116_190 Hb_000020_060--Hb_004116_190 Hb_159809_020 Hb_159809_020 Hb_000020_060--Hb_159809_020 Hb_000020_060--Hb_172426_040 Hb_003787_010 Hb_003787_010 Hb_000020_060--Hb_003787_010 Hb_002110_120 Hb_002110_120 Hb_000020_060--Hb_002110_120 Hb_000059_330--Hb_096563_010 Hb_001259_090 Hb_001259_090 Hb_000059_330--Hb_001259_090 Hb_000059_330--Hb_003428_030 Hb_000059_330--Hb_003092_040 Hb_004310_130 Hb_004310_130 Hb_000059_330--Hb_004310_130 Hb_003428_030--Hb_007691_030 Hb_003525_010 Hb_003525_010 Hb_003428_030--Hb_003525_010 Hb_000093_160 Hb_000093_160 Hb_003428_030--Hb_000093_160 Hb_000038_170 Hb_000038_170 Hb_003428_030--Hb_000038_170 Hb_003125_120 Hb_003125_120 Hb_003428_030--Hb_003125_120 Hb_000032_270 Hb_000032_270 Hb_003428_030--Hb_000032_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
60.3305 37.1372 44.2507 53.9599 55.0439 64.5241
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
83.8732 107.037 50.3098 43.1365 24.2817

CAGE analysis