Hb_002110_120

Information

Type -
Description -
Location Contig2110: 129291-132077
Sequence    

Annotation

kegg
ID tcc:TCM_034457
description Target SNARE coiled-coil domain protein
nr
ID XP_012067949.1
description PREDICTED: bet1-like protein At4g14600 [Jatropha curcas]
swissprot
ID Q8VXX9
description Bet1-like protein At4g14600 OS=Arabidopsis thaliana GN=At4g14600 PE=2 SV=1
trembl
ID A0A067KZ44
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15854 PE=4 SV=1
Gene Ontology
ID GO:0000139
description bet1-like protein at4g14600

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21859: 129373-132066 , PASA_asmbl_21860: 131157-131521
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002110_120 0.0 - - PREDICTED: bet1-like protein At4g14600 [Jatropha curcas]
2 Hb_007317_150 0.0459959224 - - PREDICTED: 40S ribosomal protein S25 [Jatropha curcas]
3 Hb_001269_630 0.055512458 - - PREDICTED: uncharacterized protein LOC105630301 [Jatropha curcas]
4 Hb_000020_060 0.0635632455 - - PREDICTED: trafficking protein particle complex subunit 4 [Jatropha curcas]
5 Hb_001235_190 0.0697992343 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
6 Hb_003656_070 0.0721444768 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]
7 Hb_008173_090 0.0757873898 - - glutathione peroxidase, putative [Ricinus communis]
8 Hb_000307_090 0.0785052788 - - hypothetical protein CICLE_v10002475mg [Citrus clementina]
9 Hb_000574_480 0.0786895389 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
10 Hb_002284_240 0.079354333 - - PREDICTED: coiled-coil domain-containing protein 115 isoform X3 [Jatropha curcas]
11 Hb_000334_210 0.0795472286 - - PREDICTED: uncharacterized protein LOC105628719 isoform X1 [Jatropha curcas]
12 Hb_000788_090 0.0808351465 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 11-like isoform X2 [Glycine max]
13 Hb_159809_020 0.0808877385 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_000630_060 0.0828951668 - - PREDICTED: iron-sulfur assembly protein IscA-like 1, mitochondrial [Jatropha curcas]
15 Hb_000926_300 0.083006272 - - PREDICTED: small ubiquitin-related modifier 1 [Jatropha curcas]
16 Hb_000007_100 0.0839662565 - - PREDICTED: uncharacterized protein LOC105640717 [Jatropha curcas]
17 Hb_002963_010 0.084482818 - - PREDICTED: autophagy-related protein 18b-like isoform X1 [Jatropha curcas]
18 Hb_007416_030 0.0852689637 - - PREDICTED: transcription initiation factor TFIID subunit 10 [Jatropha curcas]
19 Hb_002995_020 0.0856779602 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
20 Hb_001442_020 0.0863094332 - - unknown [Populus trichocarpa]

Gene co-expression network

sample Hb_002110_120 Hb_002110_120 Hb_007317_150 Hb_007317_150 Hb_002110_120--Hb_007317_150 Hb_001269_630 Hb_001269_630 Hb_002110_120--Hb_001269_630 Hb_000020_060 Hb_000020_060 Hb_002110_120--Hb_000020_060 Hb_001235_190 Hb_001235_190 Hb_002110_120--Hb_001235_190 Hb_003656_070 Hb_003656_070 Hb_002110_120--Hb_003656_070 Hb_008173_090 Hb_008173_090 Hb_002110_120--Hb_008173_090 Hb_007317_150--Hb_001235_190 Hb_007317_150--Hb_001269_630 Hb_000630_060 Hb_000630_060 Hb_007317_150--Hb_000630_060 Hb_007317_150--Hb_000020_060 Hb_000926_300 Hb_000926_300 Hb_007317_150--Hb_000926_300 Hb_001832_060 Hb_001832_060 Hb_001269_630--Hb_001832_060 Hb_001269_630--Hb_003656_070 Hb_001269_630--Hb_000020_060 Hb_002686_020 Hb_002686_020 Hb_001269_630--Hb_002686_020 Hb_002995_020 Hb_002995_020 Hb_000020_060--Hb_002995_020 Hb_004116_190 Hb_004116_190 Hb_000020_060--Hb_004116_190 Hb_159809_020 Hb_159809_020 Hb_000020_060--Hb_159809_020 Hb_172426_040 Hb_172426_040 Hb_000020_060--Hb_172426_040 Hb_003787_010 Hb_003787_010 Hb_000020_060--Hb_003787_010 Hb_001235_190--Hb_008173_090 Hb_001722_100 Hb_001722_100 Hb_001235_190--Hb_001722_100 Hb_002963_010 Hb_002963_010 Hb_001235_190--Hb_002963_010 Hb_004204_120 Hb_004204_120 Hb_001235_190--Hb_004204_120 Hb_000307_090 Hb_000307_090 Hb_001235_190--Hb_000307_090 Hb_003656_070--Hb_008173_090 Hb_001047_230 Hb_001047_230 Hb_003656_070--Hb_001047_230 Hb_000574_480 Hb_000574_480 Hb_003656_070--Hb_000574_480 Hb_029866_060 Hb_029866_060 Hb_003656_070--Hb_029866_060 Hb_000111_330 Hb_000111_330 Hb_003656_070--Hb_000111_330 Hb_004586_320 Hb_004586_320 Hb_003656_070--Hb_004586_320 Hb_000200_100 Hb_000200_100 Hb_008173_090--Hb_000200_100 Hb_008173_090--Hb_000574_480 Hb_000970_010 Hb_000970_010 Hb_008173_090--Hb_000970_010 Hb_002182_060 Hb_002182_060 Hb_008173_090--Hb_002182_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.15 14.7666 16.6044 14.3574 28.7104 21.3487
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.17 58.4914 29.5051 17.9962 8.0114

CAGE analysis