Hb_000111_330

Information

Type -
Description -
Location Contig111: 338946-341642
Sequence    

Annotation

kegg
ID tcc:TCM_045026
description LYR family of Fe/S cluster biogenesis protein
nr
ID XP_012068683.1
description PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Jatropha curcas]
swissprot
ID Q9LHI0
description NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Arabidopsis thaliana GN=At3g12260 PE=2 SV=1
trembl
ID A0A067KWF8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24545 PE=4 SV=1
Gene Ontology
ID GO:0005747
description nadh dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03407: 339069-341623
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000111_330 0.0 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Jatropha curcas]
2 Hb_003656_070 0.0637083908 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]
3 Hb_000574_480 0.0689746809 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
4 Hb_029866_060 0.0690625088 - - hypothetical protein PRUPE_ppa012628mg [Prunus persica]
5 Hb_011173_050 0.076153199 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
6 Hb_000201_120 0.0766137849 - - ubiquitin-protein ligase 2a [Hevea brasiliensis]
7 Hb_129204_030 0.0766813713 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
8 Hb_001047_230 0.0796279283 - - WD-repeat protein, putative [Ricinus communis]
9 Hb_000368_010 0.0800875263 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 18 [Jatropha curcas]
10 Hb_029904_030 0.080325672 - - aspartate aminotransferase, putative [Ricinus communis]
11 Hb_000347_410 0.0804514947 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
12 Hb_002163_020 0.0835641474 transcription factor TF Family: PHD PREDICTED: BAH and coiled-coil domain-containing protein 1-like [Jatropha curcas]
13 Hb_005431_010 0.0839026806 - - PREDICTED: glycine cleavage system H protein 2, mitochondrial [Jatropha curcas]
14 Hb_008173_090 0.0849879952 - - glutathione peroxidase, putative [Ricinus communis]
15 Hb_003787_010 0.0858421854 - - PREDICTED: 40S ribosomal protein S3-3-like [Phoenix dactylifera]
16 Hb_000025_120 0.0864494071 - - PREDICTED: uncharacterized protein LOC105628946 isoform X1 [Jatropha curcas]
17 Hb_002798_050 0.0868005681 - - l-allo-threonine aldolase, putative [Ricinus communis]
18 Hb_000987_070 0.0868082542 - - Inflorescence meristem receptor-like kinase 2 isoform 1 [Theobroma cacao]
19 Hb_000240_090 0.0868888274 - - Rab5 [Hevea brasiliensis]
20 Hb_000417_360 0.0873040796 - - PREDICTED: hexaprenyldihydroxybenzoate methyltransferase, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000111_330 Hb_000111_330 Hb_003656_070 Hb_003656_070 Hb_000111_330--Hb_003656_070 Hb_000574_480 Hb_000574_480 Hb_000111_330--Hb_000574_480 Hb_029866_060 Hb_029866_060 Hb_000111_330--Hb_029866_060 Hb_011173_050 Hb_011173_050 Hb_000111_330--Hb_011173_050 Hb_000201_120 Hb_000201_120 Hb_000111_330--Hb_000201_120 Hb_129204_030 Hb_129204_030 Hb_000111_330--Hb_129204_030 Hb_008173_090 Hb_008173_090 Hb_003656_070--Hb_008173_090 Hb_001047_230 Hb_001047_230 Hb_003656_070--Hb_001047_230 Hb_003656_070--Hb_000574_480 Hb_003656_070--Hb_029866_060 Hb_004586_320 Hb_004586_320 Hb_003656_070--Hb_004586_320 Hb_001998_050 Hb_001998_050 Hb_000574_480--Hb_001998_050 Hb_002963_010 Hb_002963_010 Hb_000574_480--Hb_002963_010 Hb_000574_480--Hb_008173_090 Hb_012675_060 Hb_012675_060 Hb_000574_480--Hb_012675_060 Hb_000173_220 Hb_000173_220 Hb_000574_480--Hb_000173_220 Hb_029866_060--Hb_008173_090 Hb_002284_010 Hb_002284_010 Hb_029866_060--Hb_002284_010 Hb_002163_020 Hb_002163_020 Hb_029866_060--Hb_002163_020 Hb_029866_060--Hb_129204_030 Hb_005568_120 Hb_005568_120 Hb_011173_050--Hb_005568_120 Hb_000175_060 Hb_000175_060 Hb_011173_050--Hb_000175_060 Hb_000368_010 Hb_000368_010 Hb_011173_050--Hb_000368_010 Hb_000215_060 Hb_000215_060 Hb_011173_050--Hb_000215_060 Hb_000373_130 Hb_000373_130 Hb_011173_050--Hb_000373_130 Hb_003581_150 Hb_003581_150 Hb_000201_120--Hb_003581_150 Hb_002830_020 Hb_002830_020 Hb_000201_120--Hb_002830_020 Hb_001016_030 Hb_001016_030 Hb_000201_120--Hb_001016_030 Hb_001616_040 Hb_001616_040 Hb_000201_120--Hb_001616_040 Hb_000840_030 Hb_000840_030 Hb_000201_120--Hb_000840_030 Hb_000201_120--Hb_000574_480 Hb_000608_370 Hb_000608_370 Hb_129204_030--Hb_000608_370 Hb_000167_140 Hb_000167_140 Hb_129204_030--Hb_000167_140 Hb_129204_030--Hb_001047_230 Hb_021409_030 Hb_021409_030 Hb_129204_030--Hb_021409_030 Hb_000240_090 Hb_000240_090 Hb_129204_030--Hb_000240_090 Hb_001277_070 Hb_001277_070 Hb_129204_030--Hb_001277_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
87.7461 59.7587 40.7822 63.8977 52.9327 54.876
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
154.313 184.63 125.147 53.1166 36.5887

CAGE analysis