Hb_000175_060

Information

Type -
Description -
Location Contig175: 35115-45791
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa010184mg
description hypothetical protein
nr
ID XP_012073154.1
description PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KXR0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06121 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16666: 35109-45809
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000175_060 0.0 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
2 Hb_011173_050 0.068828612 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
3 Hb_000215_060 0.0719472506 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM17-2-like [Jatropha curcas]
4 Hb_000086_280 0.0813483543 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 3-like [Gossypium raimondii]
5 Hb_004586_320 0.0823590159 - - PREDICTED: bet1-like protein At4g14600 [Jatropha curcas]
6 Hb_005568_120 0.0824549097 - - Prephenate dehydratase [Hevea brasiliensis]
7 Hb_005883_100 0.0827530142 - - 5-formyltetrahydrofolate cyclo-ligase, putative [Ricinus communis]
8 Hb_001085_120 0.0848247501 - - PREDICTED: UV radiation resistance-associated gene protein isoform X1 [Jatropha curcas]
9 Hb_021409_030 0.0857374526 - - PREDICTED: serine/threonine-protein kinase WNK8 isoform X3 [Jatropha curcas]
10 Hb_000417_360 0.0879905292 - - PREDICTED: hexaprenyldihydroxybenzoate methyltransferase, mitochondrial [Jatropha curcas]
11 Hb_028515_010 0.0889145617 - - PREDICTED: protein DEFECTIVE IN MERISTEM SILENCING 3 isoform X1 [Jatropha curcas]
12 Hb_001663_050 0.0917121797 - - PREDICTED: GPN-loop GTPase 3 [Jatropha curcas]
13 Hb_086639_030 0.0919759109 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
14 Hb_001998_050 0.0928538344 - - PREDICTED: alpha N-terminal protein methyltransferase 1 [Jatropha curcas]
15 Hb_000696_040 0.093002665 - - protein phosphatase 2c, putative [Ricinus communis]
16 Hb_000363_480 0.0947768267 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Fragaria vesca subsp. vesca]
17 Hb_002056_060 0.0953733659 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
18 Hb_005463_040 0.0958609193 - - signal transducer, putative [Ricinus communis]
19 Hb_032208_060 0.0963262812 - - PREDICTED: constitutive photomorphogenesis protein 10 isoform X2 [Populus euphratica]
20 Hb_005496_010 0.0965098848 - - PREDICTED: PXMP2/4 family protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_000175_060 Hb_000175_060 Hb_011173_050 Hb_011173_050 Hb_000175_060--Hb_011173_050 Hb_000215_060 Hb_000215_060 Hb_000175_060--Hb_000215_060 Hb_000086_280 Hb_000086_280 Hb_000175_060--Hb_000086_280 Hb_004586_320 Hb_004586_320 Hb_000175_060--Hb_004586_320 Hb_005568_120 Hb_005568_120 Hb_000175_060--Hb_005568_120 Hb_005883_100 Hb_005883_100 Hb_000175_060--Hb_005883_100 Hb_011173_050--Hb_005568_120 Hb_000111_330 Hb_000111_330 Hb_011173_050--Hb_000111_330 Hb_000368_010 Hb_000368_010 Hb_011173_050--Hb_000368_010 Hb_011173_050--Hb_000215_060 Hb_000373_130 Hb_000373_130 Hb_011173_050--Hb_000373_130 Hb_000363_480 Hb_000363_480 Hb_000215_060--Hb_000363_480 Hb_001565_080 Hb_001565_080 Hb_000215_060--Hb_001565_080 Hb_000496_120 Hb_000496_120 Hb_000215_060--Hb_000496_120 Hb_000349_290 Hb_000349_290 Hb_000215_060--Hb_000349_290 Hb_001085_120 Hb_001085_120 Hb_000086_280--Hb_001085_120 Hb_001776_160 Hb_001776_160 Hb_000086_280--Hb_001776_160 Hb_000638_250 Hb_000638_250 Hb_000086_280--Hb_000638_250 Hb_000261_140 Hb_000261_140 Hb_000086_280--Hb_000261_140 Hb_000240_090 Hb_000240_090 Hb_000086_280--Hb_000240_090 Hb_000453_120 Hb_000453_120 Hb_000086_280--Hb_000453_120 Hb_012675_060 Hb_012675_060 Hb_004586_320--Hb_012675_060 Hb_003656_070 Hb_003656_070 Hb_004586_320--Hb_003656_070 Hb_007943_090 Hb_007943_090 Hb_004586_320--Hb_007943_090 Hb_001998_050 Hb_001998_050 Hb_004586_320--Hb_001998_050 Hb_000574_480 Hb_000574_480 Hb_004586_320--Hb_000574_480 Hb_148200_010 Hb_148200_010 Hb_004586_320--Hb_148200_010 Hb_028515_010 Hb_028515_010 Hb_005568_120--Hb_028515_010 Hb_002676_090 Hb_002676_090 Hb_005568_120--Hb_002676_090 Hb_004567_120 Hb_004567_120 Hb_005568_120--Hb_004567_120 Hb_012114_040 Hb_012114_040 Hb_005568_120--Hb_012114_040 Hb_005568_120--Hb_000373_130 Hb_005883_100--Hb_005568_120 Hb_005883_100--Hb_012675_060 Hb_000817_030 Hb_000817_030 Hb_005883_100--Hb_000817_030 Hb_005883_100--Hb_001998_050 Hb_005883_100--Hb_001085_120 Hb_005883_100--Hb_004567_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.5843 12.8786 9.91752 14.2319 15.1779 13.0324
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.202 49.9494 39.778 18.7974 7.54205

CAGE analysis