Hb_000373_130

Information

Type -
Description -
Location Contig373: 169677-175002
Sequence    

Annotation

kegg
ID pop:POPTR_0002s06970g
description ubiquitin interaction motif-containing family protein
nr
ID XP_012066023.1
description PREDICTED: protein FAM188A [Jatropha curcas]
swissprot
ID Q0IIH8
description Protein FAM188A OS=Bos taurus GN=FAM188A PE=2 SV=1
trembl
ID A0A067LEQ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25186 PE=4 SV=1
Gene Ontology
ID GO:0005829
description protein fam188a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38124: 169765-192700
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000373_130 0.0 - - PREDICTED: protein FAM188A [Jatropha curcas]
2 Hb_004837_160 0.0570259133 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
3 Hb_028515_010 0.0596365516 - - PREDICTED: protein DEFECTIVE IN MERISTEM SILENCING 3 isoform X1 [Jatropha curcas]
4 Hb_003349_090 0.065249871 - - PREDICTED: diphthamide biosynthesis protein 2 [Jatropha curcas]
5 Hb_001519_050 0.0659391262 - - PREDICTED: protein RMD5 homolog A-like [Jatropha curcas]
6 Hb_005568_120 0.0694592596 - - Prephenate dehydratase [Hevea brasiliensis]
7 Hb_000567_120 0.0792268874 - - PREDICTED: transcription factor IIIB 50 kDa subunit-like [Jatropha curcas]
8 Hb_003697_040 0.0797285974 - - hypothetical protein B456_005G209600 [Gossypium raimondii]
9 Hb_003053_020 0.0809473839 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
10 Hb_011173_050 0.0812193719 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
11 Hb_002007_210 0.0831747572 - - PREDICTED: sucrose nonfermenting 4-like protein isoform X2 [Jatropha curcas]
12 Hb_019263_020 0.0835061159 - - PREDICTED: pentatricopeptide repeat-containing protein At2g35030, mitochondrial [Jatropha curcas]
13 Hb_009803_050 0.0839878513 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
14 Hb_001959_190 0.0842329682 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
15 Hb_020805_130 0.084785156 - - protein phosphatase 2c, putative [Ricinus communis]
16 Hb_011534_030 0.0864385767 - - hypothetical protein POPTR_0008s08530g [Populus trichocarpa]
17 Hb_000985_060 0.0890572359 - - PREDICTED: protein transport protein SFT2-like isoform X1 [Jatropha curcas]
18 Hb_004607_030 0.0892145482 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Jatropha curcas]
19 Hb_000635_150 0.0892841733 - - mitochondrial import receptor subunit TOM20-2 family protein [Populus trichocarpa]
20 Hb_004635_100 0.0895812368 - - PREDICTED: L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000373_130 Hb_000373_130 Hb_004837_160 Hb_004837_160 Hb_000373_130--Hb_004837_160 Hb_028515_010 Hb_028515_010 Hb_000373_130--Hb_028515_010 Hb_003349_090 Hb_003349_090 Hb_000373_130--Hb_003349_090 Hb_001519_050 Hb_001519_050 Hb_000373_130--Hb_001519_050 Hb_005568_120 Hb_005568_120 Hb_000373_130--Hb_005568_120 Hb_000567_120 Hb_000567_120 Hb_000373_130--Hb_000567_120 Hb_004837_160--Hb_003349_090 Hb_004837_160--Hb_028515_010 Hb_002007_210 Hb_002007_210 Hb_004837_160--Hb_002007_210 Hb_003697_040 Hb_003697_040 Hb_004837_160--Hb_003697_040 Hb_001222_080 Hb_001222_080 Hb_004837_160--Hb_001222_080 Hb_028515_010--Hb_005568_120 Hb_028515_010--Hb_003349_090 Hb_114310_080 Hb_114310_080 Hb_028515_010--Hb_114310_080 Hb_000985_060 Hb_000985_060 Hb_028515_010--Hb_000985_060 Hb_010812_120 Hb_010812_120 Hb_003349_090--Hb_010812_120 Hb_004889_010 Hb_004889_010 Hb_003349_090--Hb_004889_010 Hb_089032_030 Hb_089032_030 Hb_003349_090--Hb_089032_030 Hb_000635_150 Hb_000635_150 Hb_001519_050--Hb_000635_150 Hb_000125_190 Hb_000125_190 Hb_001519_050--Hb_000125_190 Hb_004705_120 Hb_004705_120 Hb_001519_050--Hb_004705_120 Hb_000005_080 Hb_000005_080 Hb_001519_050--Hb_000005_080 Hb_002061_040 Hb_002061_040 Hb_001519_050--Hb_002061_040 Hb_002676_090 Hb_002676_090 Hb_005568_120--Hb_002676_090 Hb_011173_050 Hb_011173_050 Hb_005568_120--Hb_011173_050 Hb_004567_120 Hb_004567_120 Hb_005568_120--Hb_004567_120 Hb_012114_040 Hb_012114_040 Hb_005568_120--Hb_012114_040 Hb_008695_100 Hb_008695_100 Hb_000567_120--Hb_008695_100 Hb_001140_220 Hb_001140_220 Hb_000567_120--Hb_001140_220 Hb_000723_080 Hb_000723_080 Hb_000567_120--Hb_000723_080 Hb_000258_270 Hb_000258_270 Hb_000567_120--Hb_000258_270 Hb_004607_030 Hb_004607_030 Hb_000567_120--Hb_004607_030 Hb_002005_020 Hb_002005_020 Hb_000567_120--Hb_002005_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.3533 18.9867 10.8192 22.3527 12.8062 22.3429
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.8095 45.1255 49.066 19.8462 19.2337

CAGE analysis