Hb_001222_080

Information

Type -
Description -
Location Contig1222: 201930-204334
Sequence    

Annotation

kegg
ID tcc:TCM_016568
description RNA-binding (RRM/RBD/RNP motifs) family protein isoform 2
nr
ID XP_012082647.1
description PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
swissprot
ID Q9LFD5
description Binding partner of ACD11 1 OS=Arabidopsis thaliana GN=BPA1 PE=1 SV=1
trembl
ID A0A067JY86
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19366 PE=4 SV=1
Gene Ontology
ID GO:0000166
description rna-binding (rrm rbd rnp motifs) family protein isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06783: 176071-204321
cDNA
(Sanger)
(ID:Location)		 022_J16.ab1: 176071-203689 , 050_J11.ab1: 176071-203778

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001222_080 0.0 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
2 Hb_011344_190 0.0721858069 - - PREDICTED: maspardin [Jatropha curcas]
3 Hb_000922_040 0.0729333262 - - PREDICTED: CASP-like protein 4A3 [Jatropha curcas]
4 Hb_000046_350 0.0736122071 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004837_160 0.0747554142 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
6 Hb_089032_030 0.0770805934 - - PREDICTED: 3-isopropylmalate dehydrogenase 2, chloroplastic-like [Jatropha curcas]
7 Hb_008232_010 0.0772238073 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
8 Hb_000982_080 0.0784868056 desease resistance Gene Name: AAA PREDICTED: 26S proteasome regulatory subunit 4 homolog A [Jatropha curcas]
9 Hb_001545_170 0.078640143 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
10 Hb_005488_200 0.080269253 - - PREDICTED: uncharacterized protein LOC105632499 isoform X1 [Jatropha curcas]
11 Hb_002007_210 0.082807504 - - PREDICTED: sucrose nonfermenting 4-like protein isoform X2 [Jatropha curcas]
12 Hb_000701_100 0.084480455 - - PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]
13 Hb_004672_010 0.0845181672 - - ecotropic viral integration site, putative [Ricinus communis]
14 Hb_001195_200 0.0849579167 - - PREDICTED: uncharacterized protein LOC105633802 [Jatropha curcas]
15 Hb_000212_290 0.0864320143 - - PREDICTED: protein TIC 20-II, chloroplastic [Jatropha curcas]
16 Hb_028515_010 0.0874163157 - - PREDICTED: protein DEFECTIVE IN MERISTEM SILENCING 3 isoform X1 [Jatropha curcas]
17 Hb_007928_030 0.0893624639 - - PREDICTED: dual specificity phosphatase Cdc25 [Jatropha curcas]
18 Hb_003697_040 0.0898893203 - - hypothetical protein B456_005G209600 [Gossypium raimondii]
19 Hb_003376_250 0.0904582139 - - Transducin/WD40 repeat-like superfamily protein [Theobroma cacao]
20 Hb_003994_260 0.0905951044 - - PREDICTED: uncharacterized protein LOC105646151 [Jatropha curcas]

Gene co-expression network

sample Hb_001222_080 Hb_001222_080 Hb_011344_190 Hb_011344_190 Hb_001222_080--Hb_011344_190 Hb_000922_040 Hb_000922_040 Hb_001222_080--Hb_000922_040 Hb_000046_350 Hb_000046_350 Hb_001222_080--Hb_000046_350 Hb_004837_160 Hb_004837_160 Hb_001222_080--Hb_004837_160 Hb_089032_030 Hb_089032_030 Hb_001222_080--Hb_089032_030 Hb_008232_010 Hb_008232_010 Hb_001222_080--Hb_008232_010 Hb_000982_080 Hb_000982_080 Hb_011344_190--Hb_000982_080 Hb_003376_250 Hb_003376_250 Hb_011344_190--Hb_003376_250 Hb_011344_190--Hb_008232_010 Hb_005488_200 Hb_005488_200 Hb_011344_190--Hb_005488_200 Hb_003633_050 Hb_003633_050 Hb_011344_190--Hb_003633_050 Hb_005269_080 Hb_005269_080 Hb_000922_040--Hb_005269_080 Hb_000384_120 Hb_000384_120 Hb_000922_040--Hb_000384_120 Hb_002016_080 Hb_002016_080 Hb_000922_040--Hb_002016_080 Hb_000701_100 Hb_000701_100 Hb_000922_040--Hb_000701_100 Hb_001410_060 Hb_001410_060 Hb_000922_040--Hb_001410_060 Hb_000072_180 Hb_000072_180 Hb_000046_350--Hb_000072_180 Hb_004672_010 Hb_004672_010 Hb_000046_350--Hb_004672_010 Hb_001284_030 Hb_001284_030 Hb_000046_350--Hb_001284_030 Hb_148113_010 Hb_148113_010 Hb_000046_350--Hb_148113_010 Hb_006420_100 Hb_006420_100 Hb_000046_350--Hb_006420_100 Hb_003349_090 Hb_003349_090 Hb_004837_160--Hb_003349_090 Hb_028515_010 Hb_028515_010 Hb_004837_160--Hb_028515_010 Hb_000373_130 Hb_000373_130 Hb_004837_160--Hb_000373_130 Hb_002007_210 Hb_002007_210 Hb_004837_160--Hb_002007_210 Hb_003697_040 Hb_003697_040 Hb_004837_160--Hb_003697_040 Hb_010812_120 Hb_010812_120 Hb_089032_030--Hb_010812_120 Hb_003502_060 Hb_003502_060 Hb_089032_030--Hb_003502_060 Hb_089032_030--Hb_003349_090 Hb_009615_070 Hb_009615_070 Hb_089032_030--Hb_009615_070 Hb_010423_030 Hb_010423_030 Hb_089032_030--Hb_010423_030 Hb_001545_170 Hb_001545_170 Hb_089032_030--Hb_001545_170 Hb_008232_010--Hb_000982_080 Hb_001123_160 Hb_001123_160 Hb_008232_010--Hb_001123_160 Hb_008232_010--Hb_004672_010 Hb_003622_040 Hb_003622_040 Hb_008232_010--Hb_003622_040 Hb_015183_060 Hb_015183_060 Hb_008232_010--Hb_015183_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.8368 15.7684 11.1301 29.3946 10.7441 16.7019
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.5962 46.2697 33.4371 25.4566 22.2092

CAGE analysis