Hb_003376_250

Information

Type -
Description -
Location Contig3376: 170808-177361
Sequence    

Annotation

kegg
ID tcc:TCM_022131
description Transducin/WD40 repeat-like superfamily protein
nr
ID XP_007027301.1
description Transducin/WD40 repeat-like superfamily protein [Theobroma cacao]
swissprot
ID A2QVV2
description Probable catabolite repression protein creC OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=creC PE=3 SV=1
trembl
ID A0A061ET28
description Transducin/WD40 repeat-like superfamily protein OS=Theobroma cacao GN=TCM_022131 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35349: 171628-172041 , PASA_asmbl_35350: 175397-176975
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003376_250 0.0 - - Transducin/WD40 repeat-like superfamily protein [Theobroma cacao]
2 Hb_000982_080 0.05418829 desease resistance Gene Name: AAA PREDICTED: 26S proteasome regulatory subunit 4 homolog A [Jatropha curcas]
3 Hb_011344_190 0.0589786994 - - PREDICTED: maspardin [Jatropha curcas]
4 Hb_005488_200 0.060842378 - - PREDICTED: uncharacterized protein LOC105632499 isoform X1 [Jatropha curcas]
5 Hb_001195_200 0.0740637506 - - PREDICTED: uncharacterized protein LOC105633802 [Jatropha curcas]
6 Hb_000327_180 0.0764241132 - - PREDICTED: TBC1 domain family member 10B-like isoform X1 [Jatropha curcas]
7 Hb_007416_060 0.0797948929 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 18 [Jatropha curcas]
8 Hb_000603_080 0.0801050765 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33170 [Vitis vinifera]
9 Hb_003847_030 0.0814193675 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Jatropha curcas]
10 Hb_001352_020 0.081592124 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 8, mitochondrial-like [Jatropha curcas]
11 Hb_000406_130 0.0818832867 - - vesicle-associated membrane protein, putative [Ricinus communis]
12 Hb_008232_010 0.0836724372 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
13 Hb_005914_170 0.0847136517 - - PREDICTED: eukaryotic translation initiation factor isoform 4E-2-like [Gossypium raimondii]
14 Hb_003633_050 0.0851785754 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
15 Hb_000116_260 0.0872638719 - - PREDICTED: uncharacterized protein LOC105628572 [Jatropha curcas]
16 Hb_000700_040 0.0875603297 - - UDP-Glycosyltransferase superfamily protein isoform 4 [Theobroma cacao]
17 Hb_001222_080 0.0904582139 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
18 Hb_001307_030 0.0913189097 - - PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Jatropha curcas]
19 Hb_007218_120 0.0924621685 - - PREDICTED: pentatricopeptide repeat-containing protein At1g51965, mitochondrial [Jatropha curcas]
20 Hb_000095_080 0.0936889315 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 7 [Jatropha curcas]

Gene co-expression network

sample Hb_003376_250 Hb_003376_250 Hb_000982_080 Hb_000982_080 Hb_003376_250--Hb_000982_080 Hb_011344_190 Hb_011344_190 Hb_003376_250--Hb_011344_190 Hb_005488_200 Hb_005488_200 Hb_003376_250--Hb_005488_200 Hb_001195_200 Hb_001195_200 Hb_003376_250--Hb_001195_200 Hb_000327_180 Hb_000327_180 Hb_003376_250--Hb_000327_180 Hb_007416_060 Hb_007416_060 Hb_003376_250--Hb_007416_060 Hb_000982_080--Hb_011344_190 Hb_000982_080--Hb_005488_200 Hb_000982_080--Hb_001195_200 Hb_008232_010 Hb_008232_010 Hb_000982_080--Hb_008232_010 Hb_006420_080 Hb_006420_080 Hb_000982_080--Hb_006420_080 Hb_011344_190--Hb_008232_010 Hb_011344_190--Hb_005488_200 Hb_003633_050 Hb_003633_050 Hb_011344_190--Hb_003633_050 Hb_001222_080 Hb_001222_080 Hb_011344_190--Hb_001222_080 Hb_005488_200--Hb_007416_060 Hb_148113_010 Hb_148113_010 Hb_005488_200--Hb_148113_010 Hb_000603_080 Hb_000603_080 Hb_005488_200--Hb_000603_080 Hb_003697_040 Hb_003697_040 Hb_005488_200--Hb_003697_040 Hb_003768_030 Hb_003768_030 Hb_001195_200--Hb_003768_030 Hb_001489_090 Hb_001489_090 Hb_001195_200--Hb_001489_090 Hb_001195_200--Hb_000327_180 Hb_000258_260 Hb_000258_260 Hb_001195_200--Hb_000258_260 Hb_003847_030 Hb_003847_030 Hb_000327_180--Hb_003847_030 Hb_002799_070 Hb_002799_070 Hb_000327_180--Hb_002799_070 Hb_005054_110 Hb_005054_110 Hb_000327_180--Hb_005054_110 Hb_000327_180--Hb_000603_080 Hb_000116_260 Hb_000116_260 Hb_007416_060--Hb_000116_260 Hb_000783_020 Hb_000783_020 Hb_007416_060--Hb_000783_020 Hb_001489_080 Hb_001489_080 Hb_007416_060--Hb_001489_080 Hb_000436_130 Hb_000436_130 Hb_007416_060--Hb_000436_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.02618 4.80942 3.74691 9.60129 3.90608 5.1565
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.71156 11.1061 12.2483 11.2236 9.57767

CAGE analysis