Hb_000436_130

Information

Type -
Description -
Location Contig436: 243982-249921
Sequence    

Annotation

kegg
ID rcu:RCOM_0977500
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID XP_012077728.1
description PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
swissprot
ID Q5Z8P0
description Probable protein phosphatase 2C 60 OS=Oryza sativa subsp. japonica GN=Os06g0717800 PE=2 SV=1
trembl
ID A0A067KNC2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13086 PE=3 SV=1
Gene Ontology
ID GO:0004722
description phosphatase 2c family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42460: 243991-249790
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000436_130 0.0 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
2 Hb_009339_030 0.0592775997 - - PREDICTED: mitogen-activated protein kinase 9-like [Jatropha curcas]
3 Hb_010883_050 0.0616293428 - - PREDICTED: oxysterol-binding protein-related protein 1C-like isoform X1 [Jatropha curcas]
4 Hb_000733_180 0.0716006391 - - PREDICTED: mitochondrial substrate carrier family protein B-like [Jatropha curcas]
5 Hb_003697_040 0.0725565525 - - hypothetical protein B456_005G209600 [Gossypium raimondii]
6 Hb_001013_030 0.0725645469 - - GTP-binding protein yptv3, putative [Ricinus communis]
7 Hb_003053_020 0.0734551046 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
8 Hb_005488_200 0.0780655854 - - PREDICTED: uncharacterized protein LOC105632499 isoform X1 [Jatropha curcas]
9 Hb_004889_010 0.0798117756 - - Vacuolar protein sorting-associated protein-like protein [Medicago truncatula]
10 Hb_000288_030 0.0798367072 - - PREDICTED: syntaxin-32 [Jatropha curcas]
11 Hb_007416_060 0.0803447612 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 18 [Jatropha curcas]
12 Hb_000016_160 0.0811293698 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
13 Hb_000827_050 0.0815893631 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
14 Hb_000853_190 0.0826709772 - - mitochondrial carrier protein, putative [Ricinus communis]
15 Hb_001489_080 0.0830805998 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
16 Hb_009615_070 0.084056672 - - type X protein phosphatase-II [Populus trichocarpa]
17 Hb_009803_050 0.0841270616 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
18 Hb_003540_030 0.0846389939 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
19 Hb_000928_070 0.0847778407 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
20 Hb_002110_200 0.0848919973 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000436_130 Hb_000436_130 Hb_009339_030 Hb_009339_030 Hb_000436_130--Hb_009339_030 Hb_010883_050 Hb_010883_050 Hb_000436_130--Hb_010883_050 Hb_000733_180 Hb_000733_180 Hb_000436_130--Hb_000733_180 Hb_003697_040 Hb_003697_040 Hb_000436_130--Hb_003697_040 Hb_001013_030 Hb_001013_030 Hb_000436_130--Hb_001013_030 Hb_003053_020 Hb_003053_020 Hb_000436_130--Hb_003053_020 Hb_009339_030--Hb_001013_030 Hb_000288_030 Hb_000288_030 Hb_009339_030--Hb_000288_030 Hb_050514_010 Hb_050514_010 Hb_009339_030--Hb_050514_010 Hb_007416_060 Hb_007416_060 Hb_009339_030--Hb_007416_060 Hb_000827_050 Hb_000827_050 Hb_009339_030--Hb_000827_050 Hb_006420_080 Hb_006420_080 Hb_010883_050--Hb_006420_080 Hb_002007_210 Hb_002007_210 Hb_010883_050--Hb_002007_210 Hb_000336_240 Hb_000336_240 Hb_010883_050--Hb_000336_240 Hb_076233_040 Hb_076233_040 Hb_010883_050--Hb_076233_040 Hb_010883_050--Hb_003697_040 Hb_000309_130 Hb_000309_130 Hb_000733_180--Hb_000309_130 Hb_000733_180--Hb_001013_030 Hb_000928_070 Hb_000928_070 Hb_000733_180--Hb_000928_070 Hb_002677_020 Hb_002677_020 Hb_000733_180--Hb_002677_020 Hb_003124_150 Hb_003124_150 Hb_000733_180--Hb_003124_150 Hb_000477_060 Hb_000477_060 Hb_003697_040--Hb_000477_060 Hb_003605_090 Hb_003605_090 Hb_003697_040--Hb_003605_090 Hb_003697_040--Hb_003053_020 Hb_004934_100 Hb_004934_100 Hb_003697_040--Hb_004934_100 Hb_004889_010 Hb_004889_010 Hb_003697_040--Hb_004889_010 Hb_000783_020 Hb_000783_020 Hb_003697_040--Hb_000783_020 Hb_005765_050 Hb_005765_050 Hb_001013_030--Hb_005765_050 Hb_004889_020 Hb_004889_020 Hb_001013_030--Hb_004889_020 Hb_000676_390 Hb_000676_390 Hb_001013_030--Hb_000676_390 Hb_003053_020--Hb_000783_020 Hb_019263_020 Hb_019263_020 Hb_003053_020--Hb_019263_020 Hb_000985_030 Hb_000985_030 Hb_003053_020--Hb_000985_030 Hb_007904_260 Hb_007904_260 Hb_003053_020--Hb_007904_260 Hb_011534_030 Hb_011534_030 Hb_003053_020--Hb_011534_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.0085 11.9011 18.6149 26.052 13.0391 17.5115
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.1832 43.3399 43.1239 16.8906 26.0339

CAGE analysis