Hb_000309_130

Information

Type -
Description -
Location Contig309: 161539-175121
Sequence    

Annotation

kegg
ID rcu:RCOM_0850500
description l-aspartate oxidase, putative (EC:1.4.3.16)
nr
ID KDP45343.1
description hypothetical protein JCGZ_09592 [Jatropha curcas]
swissprot
ID Q94AY1
description L-aspartate oxidase, chloroplastic OS=Arabidopsis thaliana GN=AO PE=1 SV=1
trembl
ID A0A067LDP4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09592 PE=4 SV=1
Gene Ontology
ID GO:0005737
description l-aspartate chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32624: 170049-176039 , PASA_asmbl_32625: 174571-175834 , PASA_asmbl_32626: 173372-173579
cDNA
(Sanger)
(ID:Location)		 032_B11.ab1: 174136-176039

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000309_130 0.0 - - hypothetical protein JCGZ_09592 [Jatropha curcas]
2 Hb_000733_180 0.0665324987 - - PREDICTED: mitochondrial substrate carrier family protein B-like [Jatropha curcas]
3 Hb_003124_150 0.0841306136 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 28-like [Jatropha curcas]
4 Hb_000928_070 0.0906643089 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
5 Hb_022250_060 0.0919895819 - - PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-1-like isoform X1 [Jatropha curcas]
6 Hb_001019_100 0.0926247401 - - BnaC02g13240D [Brassica napus]
7 Hb_000221_190 0.0940053614 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
8 Hb_002311_360 0.0950606344 - - PREDICTED: uncharacterized protein LOC105114273 [Populus euphratica]
9 Hb_000505_130 0.0951616254 - - PREDICTED: uncharacterized protein LOC105641262 isoform X1 [Jatropha curcas]
10 Hb_001013_030 0.0975789056 - - GTP-binding protein yptv3, putative [Ricinus communis]
11 Hb_006740_030 0.0976355447 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
12 Hb_158445_010 0.1010703344 - - PREDICTED: cysteine protease ATG4-like isoform X1 [Jatropha curcas]
13 Hb_000161_130 0.1013651441 - - PREDICTED: nifU-like protein 2, chloroplastic [Jatropha curcas]
14 Hb_000310_020 0.1025472522 - - hypothetical protein JCGZ_20797 [Jatropha curcas]
15 Hb_002677_020 0.104201062 - - PREDICTED: uncharacterized protein LOC105642265 [Jatropha curcas]
16 Hb_001541_120 0.1049133502 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
17 Hb_000086_140 0.105721428 - - PREDICTED: probable arabinose 5-phosphate isomerase [Jatropha curcas]
18 Hb_002043_030 0.1059540113 - - hypothetical protein RCOM_1486170 [Ricinus communis]
19 Hb_000140_090 0.1060662039 - - PREDICTED: C-terminal binding protein AN [Jatropha curcas]
20 Hb_000856_010 0.1077471631 - - PREDICTED: uncharacterized protein LOC105640466 [Jatropha curcas]

Gene co-expression network

sample Hb_000309_130 Hb_000309_130 Hb_000733_180 Hb_000733_180 Hb_000309_130--Hb_000733_180 Hb_003124_150 Hb_003124_150 Hb_000309_130--Hb_003124_150 Hb_000928_070 Hb_000928_070 Hb_000309_130--Hb_000928_070 Hb_022250_060 Hb_022250_060 Hb_000309_130--Hb_022250_060 Hb_001019_100 Hb_001019_100 Hb_000309_130--Hb_001019_100 Hb_000221_190 Hb_000221_190 Hb_000309_130--Hb_000221_190 Hb_001013_030 Hb_001013_030 Hb_000733_180--Hb_001013_030 Hb_000436_130 Hb_000436_130 Hb_000733_180--Hb_000436_130 Hb_000733_180--Hb_000928_070 Hb_002677_020 Hb_002677_020 Hb_000733_180--Hb_002677_020 Hb_000733_180--Hb_003124_150 Hb_000310_020 Hb_000310_020 Hb_003124_150--Hb_000310_020 Hb_003124_150--Hb_000928_070 Hb_000505_130 Hb_000505_130 Hb_003124_150--Hb_000505_130 Hb_000729_030 Hb_000729_030 Hb_003124_150--Hb_000729_030 Hb_000336_150 Hb_000336_150 Hb_003124_150--Hb_000336_150 Hb_000580_020 Hb_000580_020 Hb_003124_150--Hb_000580_020 Hb_001541_120 Hb_001541_120 Hb_000928_070--Hb_001541_120 Hb_000288_030 Hb_000288_030 Hb_000928_070--Hb_000288_030 Hb_000856_010 Hb_000856_010 Hb_000928_070--Hb_000856_010 Hb_012022_040 Hb_012022_040 Hb_000928_070--Hb_012022_040 Hb_003582_060 Hb_003582_060 Hb_000928_070--Hb_003582_060 Hb_000140_090 Hb_000140_090 Hb_000928_070--Hb_000140_090 Hb_007317_010 Hb_007317_010 Hb_022250_060--Hb_007317_010 Hb_022250_060--Hb_000221_190 Hb_000926_090 Hb_000926_090 Hb_022250_060--Hb_000926_090 Hb_004162_130 Hb_004162_130 Hb_022250_060--Hb_004162_130 Hb_002217_020 Hb_002217_020 Hb_022250_060--Hb_002217_020 Hb_000393_020 Hb_000393_020 Hb_022250_060--Hb_000393_020 Hb_001019_100--Hb_003124_150 Hb_003360_040 Hb_003360_040 Hb_001019_100--Hb_003360_040 Hb_000920_200 Hb_000920_200 Hb_001019_100--Hb_000920_200 Hb_002119_130 Hb_002119_130 Hb_001019_100--Hb_002119_130 Hb_006740_030 Hb_006740_030 Hb_001019_100--Hb_006740_030 Hb_000221_190--Hb_003582_060 Hb_000221_190--Hb_012022_040 Hb_000221_190--Hb_000310_020 Hb_000221_190--Hb_000505_130 Hb_006615_240 Hb_006615_240 Hb_000221_190--Hb_006615_240 Hb_001278_100 Hb_001278_100 Hb_000221_190--Hb_001278_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.05235 12.3007 14.8479 14.2355 4.21424 7.92332
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.7763 19.1502 19.7071 6.9481 13.2078

CAGE analysis