Hb_006740_030

Information

Type -
Description -
Location Contig6740: 42838-49892
Sequence    

Annotation

kegg
ID tcc:TCM_046937
description Coiled-coil domain-containing protein 109A isoform 1
nr
ID XP_012077665.1
description PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
swissprot
ID Q8VYR0
description Calcium uniporter protein 5, mitochondrial OS=Arabidopsis thaliana GN=At1g57610 PE=2 SV=1
trembl
ID A0A067LML8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17266 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53520: 42697-49829 , PASA_asmbl_53521: 45694-45875
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006740_030 0.0 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
2 Hb_000140_090 0.0485433752 - - PREDICTED: C-terminal binding protein AN [Jatropha curcas]
3 Hb_001541_120 0.0653760166 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
4 Hb_000928_070 0.0751542245 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
5 Hb_000811_070 0.0760471023 - - PREDICTED: uncharacterized protein LOC105650695 [Jatropha curcas]
6 Hb_008421_020 0.0780107355 - - PREDICTED: uncharacterized protein LOC105635546 isoform X2 [Jatropha curcas]
7 Hb_007533_040 0.0819942557 - - protein phosphatase 2c, putative [Ricinus communis]
8 Hb_005016_040 0.0832114761 transcription factor TF Family: E2F-DP PREDICTED: transcription factor-like protein DPB isoform X2 [Jatropha curcas]
9 Hb_000733_180 0.0863912629 - - PREDICTED: mitochondrial substrate carrier family protein B-like [Jatropha curcas]
10 Hb_003124_150 0.087954374 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 28-like [Jatropha curcas]
11 Hb_032717_060 0.0909407729 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ18 isoform X1 [Jatropha curcas]
12 Hb_003913_130 0.0917491387 - - histone deacetylase 1, 2 ,3, putative [Ricinus communis]
13 Hb_001019_100 0.0953231965 - - BnaC02g13240D [Brassica napus]
14 Hb_005167_010 0.0957895834 - - PREDICTED: serine/threonine-protein kinase At5g01020 isoform X1 [Jatropha curcas]
15 Hb_004218_020 0.0964662009 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001287_040 0.0967725481 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
17 Hb_000288_030 0.0974852435 - - PREDICTED: syntaxin-32 [Jatropha curcas]
18 Hb_000309_130 0.0976355447 - - hypothetical protein JCGZ_09592 [Jatropha curcas]
19 Hb_001766_050 0.101121665 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29290 [Jatropha curcas]
20 Hb_008566_030 0.1011679133 - - hypothetical protein POPTR_0013s02780g [Populus trichocarpa]

Gene co-expression network

sample Hb_006740_030 Hb_006740_030 Hb_000140_090 Hb_000140_090 Hb_006740_030--Hb_000140_090 Hb_001541_120 Hb_001541_120 Hb_006740_030--Hb_001541_120 Hb_000928_070 Hb_000928_070 Hb_006740_030--Hb_000928_070 Hb_000811_070 Hb_000811_070 Hb_006740_030--Hb_000811_070 Hb_008421_020 Hb_008421_020 Hb_006740_030--Hb_008421_020 Hb_007533_040 Hb_007533_040 Hb_006740_030--Hb_007533_040 Hb_000140_090--Hb_000928_070 Hb_000140_090--Hb_001541_120 Hb_000140_090--Hb_007533_040 Hb_005016_040 Hb_005016_040 Hb_000140_090--Hb_005016_040 Hb_010578_080 Hb_010578_080 Hb_000140_090--Hb_010578_080 Hb_001541_120--Hb_000928_070 Hb_001766_050 Hb_001766_050 Hb_001541_120--Hb_001766_050 Hb_001541_120--Hb_008421_020 Hb_003124_150 Hb_003124_150 Hb_001541_120--Hb_003124_150 Hb_000288_030 Hb_000288_030 Hb_000928_070--Hb_000288_030 Hb_000856_010 Hb_000856_010 Hb_000928_070--Hb_000856_010 Hb_012022_040 Hb_012022_040 Hb_000928_070--Hb_012022_040 Hb_003582_060 Hb_003582_060 Hb_000928_070--Hb_003582_060 Hb_006846_150 Hb_006846_150 Hb_000811_070--Hb_006846_150 Hb_000811_070--Hb_008421_020 Hb_000487_260 Hb_000487_260 Hb_000811_070--Hb_000487_260 Hb_007904_230 Hb_007904_230 Hb_000811_070--Hb_007904_230 Hb_005167_010 Hb_005167_010 Hb_000811_070--Hb_005167_010 Hb_013405_020 Hb_013405_020 Hb_008421_020--Hb_013405_020 Hb_003153_010 Hb_003153_010 Hb_008421_020--Hb_003153_010 Hb_004108_160 Hb_004108_160 Hb_008421_020--Hb_004108_160 Hb_008421_020--Hb_005016_040 Hb_004583_010 Hb_004583_010 Hb_007533_040--Hb_004583_010 Hb_003913_130 Hb_003913_130 Hb_007533_040--Hb_003913_130 Hb_001357_200 Hb_001357_200 Hb_007533_040--Hb_001357_200 Hb_005601_040 Hb_005601_040 Hb_007533_040--Hb_005601_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.31006 2.49639 3.65452 3.1666 1.62851 1.46004
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.44209 4.25083 4.38004 2.06049 4.22385

CAGE analysis