Hb_004583_010

Information

Type -
Description -
Location Contig4583: 15396-19030
Sequence    

Annotation

kegg
ID pop:POPTR_0006s00960g
description POPTRDRAFT_761764; hypothetical protein
nr
ID XP_012066420.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g22150, chloroplastic [Jatropha curcas]
swissprot
ID Q9LIE7
description Pentatricopeptide repeat-containing protein At3g22150, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E95 PE=2 SV=1
trembl
ID A0A067L304
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00476 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43497: 15714-16053 , PASA_asmbl_43499: 16944-17378 , PASA_asmbl_43501: 17501-18760
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004583_010 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g22150, chloroplastic [Jatropha curcas]
2 Hb_007533_040 0.0661369106 - - protein phosphatase 2c, putative [Ricinus communis]
3 Hb_001629_030 0.0785715696 - - PAP-specific phosphatase HAL2-like family protein [Populus trichocarpa]
4 Hb_008421_020 0.0801752576 - - PREDICTED: uncharacterized protein LOC105635546 isoform X2 [Jatropha curcas]
5 Hb_004108_160 0.0833096818 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
6 Hb_003153_010 0.0886909695 - - PREDICTED: diacylglycerol kinase 3-like [Jatropha curcas]
7 Hb_001818_100 0.0891383475 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
8 Hb_002769_030 0.0892538168 - - PREDICTED: MATE efflux family protein 4, chloroplastic-like [Jatropha curcas]
9 Hb_008959_010 0.0928306842 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005601_040 0.0939759351 - - Histone deacetylase 1 isoform 1 [Theobroma cacao]
11 Hb_091296_010 0.0969711471 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
12 Hb_003913_130 0.0978182708 - - histone deacetylase 1, 2 ,3, putative [Ricinus communis]
13 Hb_000805_100 0.1008295384 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 10, mitochondrial isoform X1 [Jatropha curcas]
14 Hb_000094_070 0.1011213972 - - PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X2 [Jatropha curcas]
15 Hb_001541_120 0.1018312324 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
16 Hb_000768_200 0.1033560723 - - hypothetical protein POPTR_0013s06910g [Populus trichocarpa]
17 Hb_000482_040 0.1034540123 - - Protein YME1, putative [Ricinus communis]
18 Hb_001357_200 0.103542887 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein RCD1 homolog isoform X1 [Jatropha curcas]
19 Hb_000184_170 0.1035793408 - - hypothetical protein RCOM_1213430 [Ricinus communis]
20 Hb_003025_100 0.104028788 - - PREDICTED: serine/threonine-protein phosphatase 5 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_004583_010 Hb_004583_010 Hb_007533_040 Hb_007533_040 Hb_004583_010--Hb_007533_040 Hb_001629_030 Hb_001629_030 Hb_004583_010--Hb_001629_030 Hb_008421_020 Hb_008421_020 Hb_004583_010--Hb_008421_020 Hb_004108_160 Hb_004108_160 Hb_004583_010--Hb_004108_160 Hb_003153_010 Hb_003153_010 Hb_004583_010--Hb_003153_010 Hb_001818_100 Hb_001818_100 Hb_004583_010--Hb_001818_100 Hb_000140_090 Hb_000140_090 Hb_007533_040--Hb_000140_090 Hb_003913_130 Hb_003913_130 Hb_007533_040--Hb_003913_130 Hb_001357_200 Hb_001357_200 Hb_007533_040--Hb_001357_200 Hb_006740_030 Hb_006740_030 Hb_007533_040--Hb_006740_030 Hb_005601_040 Hb_005601_040 Hb_007533_040--Hb_005601_040 Hb_001629_030--Hb_001818_100 Hb_001629_030--Hb_005601_040 Hb_001629_030--Hb_004108_160 Hb_000656_010 Hb_000656_010 Hb_001629_030--Hb_000656_010 Hb_004052_170 Hb_004052_170 Hb_001629_030--Hb_004052_170 Hb_001629_030--Hb_003153_010 Hb_000811_070 Hb_000811_070 Hb_008421_020--Hb_000811_070 Hb_013405_020 Hb_013405_020 Hb_008421_020--Hb_013405_020 Hb_001541_120 Hb_001541_120 Hb_008421_020--Hb_001541_120 Hb_008421_020--Hb_003153_010 Hb_008421_020--Hb_004108_160 Hb_005016_040 Hb_005016_040 Hb_008421_020--Hb_005016_040 Hb_004108_160--Hb_003153_010 Hb_000556_090 Hb_000556_090 Hb_004108_160--Hb_000556_090 Hb_008959_010 Hb_008959_010 Hb_004108_160--Hb_008959_010 Hb_004108_160--Hb_001818_100 Hb_003153_010--Hb_000556_090 Hb_003376_230 Hb_003376_230 Hb_003153_010--Hb_003376_230 Hb_002769_030 Hb_002769_030 Hb_003153_010--Hb_002769_030 Hb_000184_170 Hb_000184_170 Hb_003153_010--Hb_000184_170 Hb_003025_100 Hb_003025_100 Hb_001818_100--Hb_003025_100 Hb_001818_100--Hb_004052_170 Hb_001818_100--Hb_005601_040 Hb_000768_200 Hb_000768_200 Hb_001818_100--Hb_000768_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.23599 1.3189 2.50993 1.93813 0.955952 1.98675
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.31838 2.20461 3.11058 1.78654 3.31842

CAGE analysis