Hb_001629_030

Information

Type -
Description -
Location Contig1629: 12586-21790
Sequence    

Annotation

kegg
ID pop:POPTR_0011s12530g
description POPTRDRAFT_568956; PAP-specific phosphatase HAL2-like family protein
nr
ID XP_002317523.1
description PAP-specific phosphatase HAL2-like family protein [Populus trichocarpa]
swissprot
ID Q38945
description PAP-specific phosphatase HAL2-like OS=Arabidopsis thaliana GN=AHL PE=2 SV=1
trembl
ID B9HZZ8
description PAP-specific phosphatase HAL2-like family protein OS=Populus trichocarpa GN=POPTR_0011s12530g PE=4 SV=1
Gene Ontology
ID GO:0004441
description pap-specific phosphatase hal2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14780: 12622-21672
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001629_030 0.0 - - PAP-specific phosphatase HAL2-like family protein [Populus trichocarpa]
2 Hb_001818_100 0.0461929101 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
3 Hb_005601_040 0.0593766486 - - Histone deacetylase 1 isoform 1 [Theobroma cacao]
4 Hb_004108_160 0.0610093446 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
5 Hb_000656_010 0.0690068882 - - PREDICTED: uncharacterized protein LOC105631354 isoform X1 [Jatropha curcas]
6 Hb_004052_170 0.0709783456 - - PREDICTED: pentatricopeptide repeat-containing protein PNM1, mitochondrial [Jatropha curcas]
7 Hb_003153_010 0.0731506354 - - PREDICTED: diacylglycerol kinase 3-like [Jatropha curcas]
8 Hb_003025_100 0.0735530729 - - PREDICTED: serine/threonine-protein phosphatase 5 isoform X2 [Jatropha curcas]
9 Hb_002769_030 0.0768498682 - - PREDICTED: MATE efflux family protein 4, chloroplastic-like [Jatropha curcas]
10 Hb_008959_010 0.0778079444 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000189_550 0.0782690508 - - PREDICTED: protein transport protein Sec24-like At4g32640 [Jatropha curcas]
12 Hb_000072_320 0.0783816403 - - PREDICTED: E3 ubiquitin-protein ligase RLIM-like [Jatropha curcas]
13 Hb_004583_010 0.0785715696 - - PREDICTED: pentatricopeptide repeat-containing protein At3g22150, chloroplastic [Jatropha curcas]
14 Hb_005976_080 0.0795083017 - - PREDICTED: RNA-binding protein Musashi homolog 1 [Jatropha curcas]
15 Hb_003943_110 0.0805339333 transcription factor TF Family: MYB-related Zuotin, putative [Ricinus communis]
16 Hb_000095_080 0.0833454878 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 7 [Jatropha curcas]
17 Hb_002748_020 0.0833572894 - - transducin family protein [Populus trichocarpa]
18 Hb_001195_400 0.0842021707 - - glucose-6-phosphate isomerase, putative [Ricinus communis]
19 Hb_001936_130 0.0848349002 - - PREDICTED: signal recognition particle receptor subunit beta-like [Jatropha curcas]
20 Hb_000207_050 0.0849714986 - - PREDICTED: uncharacterized protein LOC105634369 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001629_030 Hb_001629_030 Hb_001818_100 Hb_001818_100 Hb_001629_030--Hb_001818_100 Hb_005601_040 Hb_005601_040 Hb_001629_030--Hb_005601_040 Hb_004108_160 Hb_004108_160 Hb_001629_030--Hb_004108_160 Hb_000656_010 Hb_000656_010 Hb_001629_030--Hb_000656_010 Hb_004052_170 Hb_004052_170 Hb_001629_030--Hb_004052_170 Hb_003153_010 Hb_003153_010 Hb_001629_030--Hb_003153_010 Hb_003025_100 Hb_003025_100 Hb_001818_100--Hb_003025_100 Hb_001818_100--Hb_004052_170 Hb_001818_100--Hb_004108_160 Hb_001818_100--Hb_005601_040 Hb_000768_200 Hb_000768_200 Hb_001818_100--Hb_000768_200 Hb_001195_400 Hb_001195_400 Hb_005601_040--Hb_001195_400 Hb_005976_080 Hb_005976_080 Hb_005601_040--Hb_005976_080 Hb_000185_220 Hb_000185_220 Hb_005601_040--Hb_000185_220 Hb_003305_040 Hb_003305_040 Hb_005601_040--Hb_003305_040 Hb_004108_160--Hb_003153_010 Hb_000556_090 Hb_000556_090 Hb_004108_160--Hb_000556_090 Hb_008959_010 Hb_008959_010 Hb_004108_160--Hb_008959_010 Hb_008421_020 Hb_008421_020 Hb_004108_160--Hb_008421_020 Hb_001876_010 Hb_001876_010 Hb_000656_010--Hb_001876_010 Hb_000789_200 Hb_000789_200 Hb_000656_010--Hb_000789_200 Hb_000656_010--Hb_005976_080 Hb_000189_550 Hb_000189_550 Hb_000656_010--Hb_000189_550 Hb_013726_090 Hb_013726_090 Hb_000656_010--Hb_013726_090 Hb_004052_170--Hb_000556_090 Hb_001157_240 Hb_001157_240 Hb_004052_170--Hb_001157_240 Hb_000340_230 Hb_000340_230 Hb_004052_170--Hb_000340_230 Hb_029510_050 Hb_029510_050 Hb_004052_170--Hb_029510_050 Hb_003153_010--Hb_000556_090 Hb_003376_230 Hb_003376_230 Hb_003153_010--Hb_003376_230 Hb_002769_030 Hb_002769_030 Hb_003153_010--Hb_002769_030 Hb_003153_010--Hb_008421_020 Hb_000184_170 Hb_000184_170 Hb_003153_010--Hb_000184_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.95031 5.08883 7.52163 8.78195 5.11706 6.74722
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.51243 7.10639 11.4044 9.61699 12.1951

CAGE analysis