Hb_000189_550

Information

Type -
Description -
Location Contig189: 426154-439031
Sequence    

Annotation

kegg
ID rcu:RCOM_1428540
description Protein transport protein Sec24C, putative
nr
ID XP_012089212.1
description PREDICTED: protein transport protein Sec24-like At4g32640 [Jatropha curcas]
swissprot
ID Q9M081
description Protein transport protein Sec24-like At4g32640 OS=Arabidopsis thaliana GN=At4g32640 PE=2 SV=3
trembl
ID A0A067JIB6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23460 PE=4 SV=1
Gene Ontology
ID GO:0030127
description protein transport protein sec24-like at4g32640

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18710: 426342-438937
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000189_550 0.0 - - PREDICTED: protein transport protein Sec24-like At4g32640 [Jatropha curcas]
2 Hb_001876_010 0.0585651961 - - PREDICTED: arginyl-tRNA--protein transferase 2-like isoform X1 [Jatropha curcas]
3 Hb_002908_050 0.0599598654 - - hypothetical protein CISIN_1g0022902mg, partial [Citrus sinensis]
4 Hb_001105_020 0.0659671768 - - expressed protein, putative [Ricinus communis]
5 Hb_000011_060 0.066931459 - - PREDICTED: exportin-7 isoform X1 [Jatropha curcas]
6 Hb_000352_310 0.0689848634 - - hypothetical protein CISIN_1g0017891mg, partial [Citrus sinensis]
7 Hb_000656_010 0.0720715639 - - PREDICTED: uncharacterized protein LOC105631354 isoform X1 [Jatropha curcas]
8 Hb_000789_200 0.0775552866 - - mitochondrial processing peptidase alpha subunit, putative [Ricinus communis]
9 Hb_000120_080 0.0777509867 - - PREDICTED: probable pyridoxal 5'-phosphate synthase subunit PDX1 [Jatropha curcas]
10 Hb_001629_030 0.0782690508 - - PAP-specific phosphatase HAL2-like family protein [Populus trichocarpa]
11 Hb_002026_150 0.0785975793 transcription factor TF Family: SNF2 PREDICTED: DNA repair helicase XPB1 isoform X1 [Jatropha curcas]
12 Hb_001440_030 0.0822549286 - - PREDICTED: exocyst complex component SEC8 [Jatropha curcas]
13 Hb_000352_340 0.0826523692 - - PREDICTED: importin-13 [Jatropha curcas]
14 Hb_000406_200 0.0827538106 - - PREDICTED: translation initiation factor eIF-2B subunit epsilon-like isoform X4 [Jatropha curcas]
15 Hb_000363_040 0.0840467645 - - Protein transport protein Sec24A, putative [Ricinus communis]
16 Hb_004480_100 0.0844700071 - - PREDICTED: calcium homeostasis endoplasmic reticulum protein [Jatropha curcas]
17 Hb_000984_170 0.0847873416 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
18 Hb_002768_060 0.0860302025 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X1 [Jatropha curcas]
19 Hb_000580_120 0.0862893773 - - PREDICTED: transketolase, chloroplastic [Jatropha curcas]
20 Hb_000053_040 0.0876560395 - - hypothetical protein CISIN_1g0010392mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_000189_550 Hb_000189_550 Hb_001876_010 Hb_001876_010 Hb_000189_550--Hb_001876_010 Hb_002908_050 Hb_002908_050 Hb_000189_550--Hb_002908_050 Hb_001105_020 Hb_001105_020 Hb_000189_550--Hb_001105_020 Hb_000011_060 Hb_000011_060 Hb_000189_550--Hb_000011_060 Hb_000352_310 Hb_000352_310 Hb_000189_550--Hb_000352_310 Hb_000656_010 Hb_000656_010 Hb_000189_550--Hb_000656_010 Hb_001876_010--Hb_000011_060 Hb_001876_010--Hb_002908_050 Hb_000069_210 Hb_000069_210 Hb_001876_010--Hb_000069_210 Hb_000028_390 Hb_000028_390 Hb_001876_010--Hb_000028_390 Hb_000984_170 Hb_000984_170 Hb_001876_010--Hb_000984_170 Hb_002908_050--Hb_000984_170 Hb_002908_050--Hb_000011_060 Hb_000363_040 Hb_000363_040 Hb_002908_050--Hb_000363_040 Hb_004480_100 Hb_004480_100 Hb_002908_050--Hb_004480_100 Hb_000614_240 Hb_000614_240 Hb_001105_020--Hb_000614_240 Hb_002026_150 Hb_002026_150 Hb_001105_020--Hb_002026_150 Hb_000261_480 Hb_000261_480 Hb_001105_020--Hb_000261_480 Hb_001105_020--Hb_000011_060 Hb_009296_040 Hb_009296_040 Hb_001105_020--Hb_009296_040 Hb_013726_090 Hb_013726_090 Hb_000011_060--Hb_013726_090 Hb_000011_060--Hb_000614_240 Hb_000011_060--Hb_000984_170 Hb_010142_020 Hb_010142_020 Hb_000011_060--Hb_010142_020 Hb_000352_310--Hb_000011_060 Hb_001876_050 Hb_001876_050 Hb_000352_310--Hb_001876_050 Hb_027073_020 Hb_027073_020 Hb_000352_310--Hb_027073_020 Hb_003465_030 Hb_003465_030 Hb_000352_310--Hb_003465_030 Hb_001301_150 Hb_001301_150 Hb_000352_310--Hb_001301_150 Hb_000656_010--Hb_001876_010 Hb_000789_200 Hb_000789_200 Hb_000656_010--Hb_000789_200 Hb_001629_030 Hb_001629_030 Hb_000656_010--Hb_001629_030 Hb_005976_080 Hb_005976_080 Hb_000656_010--Hb_005976_080 Hb_000656_010--Hb_013726_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.85595 13.0243 13.4309 19.0651 15.076 12.0668
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.8255 12.479 19.8748 26.6519 26.0288

CAGE analysis