Hb_001105_020

Information

Type -
Description -
Location Contig1105: 8025-12673
Sequence    

Annotation

kegg
ID rcu:RCOM_1341640
description expressed protein, putative
nr
ID XP_002515132.1
description expressed protein, putative [Ricinus communis]
swissprot
ID Q9BQ70
description Transcription factor 25 OS=Homo sapiens GN=TCF25 PE=1 SV=1
trembl
ID B9RMZ3
description Expressed protein, putative OS=Ricinus communis GN=RCOM_1341640 PE=4 SV=1
Gene Ontology
ID GO:0005829
description transcription factor 25

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03277: 8292-10032 , PASA_asmbl_03278: 10109-11097 , PASA_asmbl_03279: 11213-11351 , PASA_asmbl_03280: 11499-11676 , PASA_asmbl_03281: 11720-11841
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001105_020 0.0 - - expressed protein, putative [Ricinus communis]
2 Hb_000614_240 0.0615176448 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
3 Hb_002026_150 0.0619318948 transcription factor TF Family: SNF2 PREDICTED: DNA repair helicase XPB1 isoform X1 [Jatropha curcas]
4 Hb_000261_480 0.0620287883 - - 26S proteasome regulatory subunit family protein [Populus trichocarpa]
5 Hb_000011_060 0.0624185104 - - PREDICTED: exportin-7 isoform X1 [Jatropha curcas]
6 Hb_000189_550 0.0659671768 - - PREDICTED: protein transport protein Sec24-like At4g32640 [Jatropha curcas]
7 Hb_009296_040 0.0697562836 - - hypothetical protein L484_007435 [Morus notabilis]
8 Hb_002890_130 0.0698710571 - - tip120, putative [Ricinus communis]
9 Hb_001999_310 0.0708452292 - - PREDICTED: lysosomal beta glucosidase-like [Jatropha curcas]
10 Hb_002908_050 0.0728264455 - - hypothetical protein CISIN_1g0022902mg, partial [Citrus sinensis]
11 Hb_013726_090 0.0729082582 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
12 Hb_004208_050 0.0735969884 desease resistance Gene Name: CDC48_N cell division cycle protein 48 [Hevea brasiliensis]
13 Hb_003280_020 0.0738413682 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
14 Hb_011819_020 0.0744387106 - - PREDICTED: uncharacterized protein LOC105643703 isoform X1 [Jatropha curcas]
15 Hb_010142_020 0.074687418 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001348_080 0.0750351017 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
17 Hb_001440_030 0.0756179246 - - PREDICTED: exocyst complex component SEC8 [Jatropha curcas]
18 Hb_003943_110 0.0776440743 transcription factor TF Family: MYB-related Zuotin, putative [Ricinus communis]
19 Hb_000406_200 0.0779236295 - - PREDICTED: translation initiation factor eIF-2B subunit epsilon-like isoform X4 [Jatropha curcas]
20 Hb_002968_080 0.0785766235 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 5 [Jatropha curcas]

Gene co-expression network

sample Hb_001105_020 Hb_001105_020 Hb_000614_240 Hb_000614_240 Hb_001105_020--Hb_000614_240 Hb_002026_150 Hb_002026_150 Hb_001105_020--Hb_002026_150 Hb_000261_480 Hb_000261_480 Hb_001105_020--Hb_000261_480 Hb_000011_060 Hb_000011_060 Hb_001105_020--Hb_000011_060 Hb_000189_550 Hb_000189_550 Hb_001105_020--Hb_000189_550 Hb_009296_040 Hb_009296_040 Hb_001105_020--Hb_009296_040 Hb_001999_310 Hb_001999_310 Hb_000614_240--Hb_001999_310 Hb_010142_020 Hb_010142_020 Hb_000614_240--Hb_010142_020 Hb_000111_290 Hb_000111_290 Hb_000614_240--Hb_000111_290 Hb_011016_050 Hb_011016_050 Hb_000614_240--Hb_011016_050 Hb_000614_240--Hb_000011_060 Hb_002456_010 Hb_002456_010 Hb_000614_240--Hb_002456_010 Hb_002026_150--Hb_010142_020 Hb_002169_050 Hb_002169_050 Hb_002026_150--Hb_002169_050 Hb_000366_200 Hb_000366_200 Hb_002026_150--Hb_000366_200 Hb_002026_150--Hb_000011_060 Hb_002026_150--Hb_000614_240 Hb_004208_050 Hb_004208_050 Hb_000261_480--Hb_004208_050 Hb_011819_020 Hb_011819_020 Hb_000261_480--Hb_011819_020 Hb_004048_120 Hb_004048_120 Hb_000261_480--Hb_004048_120 Hb_002890_130 Hb_002890_130 Hb_000261_480--Hb_002890_130 Hb_003280_020 Hb_003280_020 Hb_000261_480--Hb_003280_020 Hb_001377_350 Hb_001377_350 Hb_000261_480--Hb_001377_350 Hb_001876_010 Hb_001876_010 Hb_000011_060--Hb_001876_010 Hb_013726_090 Hb_013726_090 Hb_000011_060--Hb_013726_090 Hb_000984_170 Hb_000984_170 Hb_000011_060--Hb_000984_170 Hb_000011_060--Hb_010142_020 Hb_000189_550--Hb_001876_010 Hb_002908_050 Hb_002908_050 Hb_000189_550--Hb_002908_050 Hb_000189_550--Hb_000011_060 Hb_000352_310 Hb_000352_310 Hb_000189_550--Hb_000352_310 Hb_000656_010 Hb_000656_010 Hb_000189_550--Hb_000656_010 Hb_000140_210 Hb_000140_210 Hb_009296_040--Hb_000140_210 Hb_009296_040--Hb_011016_050 Hb_009296_040--Hb_010142_020 Hb_000028_390 Hb_000028_390 Hb_009296_040--Hb_000028_390 Hb_000537_050 Hb_000537_050 Hb_009296_040--Hb_000537_050 Hb_009296_040--Hb_000614_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.37042 4.94262 5.56053 6.86692 4.88041 5.1143
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.92332 3.96921 6.63468 10.2141 8.36448

CAGE analysis