Hb_000140_210

Information

Type -
Description -
Location Contig140: 169899-185494
Sequence    

Annotation

kegg
ID rcu:RCOM_1616650
description sec10, putative
nr
ID XP_002511919.1
description sec10, putative [Ricinus communis]
swissprot
ID Q8RVQ5
description Exocyst complex component SEC10 OS=Arabidopsis thaliana GN=SEC10 PE=1 SV=2
trembl
ID B9RDY0
description Sec10, putative OS=Ricinus communis GN=RCOM_1616650 PE=4 SV=1
Gene Ontology
ID GO:0000145
description exocyst complex component sec10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10834: 172982-185617 , PASA_asmbl_10835: 184888-185035 , PASA_asmbl_10836: 173311-173499
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000140_210 0.0 - - sec10, putative [Ricinus communis]
2 Hb_003544_050 0.0452924615 - - PREDICTED: uncharacterized protein LOC105644300 isoform X1 [Jatropha curcas]
3 Hb_009296_040 0.0529531677 - - hypothetical protein L484_007435 [Morus notabilis]
4 Hb_011016_050 0.0560957757 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 isoform X1 [Jatropha curcas]
5 Hb_000066_170 0.0633223579 - - PREDICTED: phosphatidylinositol-3-phosphatase myotubularin-1 isoform X2 [Jatropha curcas]
6 Hb_085781_020 0.0638534914 - - PREDICTED: extra-large guanine nucleotide-binding protein 1 [Jatropha curcas]
7 Hb_000028_390 0.0684124217 - - PREDICTED: extra-large guanine nucleotide-binding protein 3-like [Jatropha curcas]
8 Hb_000537_050 0.0697726882 - - AP-2 complex subunit beta-1, putative [Ricinus communis]
9 Hb_001440_030 0.0713240237 - - PREDICTED: exocyst complex component SEC8 [Jatropha curcas]
10 Hb_000809_230 0.0747806766 - - PREDICTED: uncharacterized protein LOC105639681 isoform X1 [Jatropha curcas]
11 Hb_004019_120 0.0753983278 - - PREDICTED: conserved oligomeric Golgi complex subunit 1 [Jatropha curcas]
12 Hb_004030_080 0.0754323932 - - hypothetical protein JCGZ_25110 [Jatropha curcas]
13 Hb_000984_170 0.0770880086 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
14 Hb_071130_010 0.0785516068 - - PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]
15 Hb_000072_130 0.0802302041 - - hypothetical protein OsJ_28567 [Oryza sativa Japonica Group]
16 Hb_000069_120 0.0803218605 - - PREDICTED: uncharacterized protein LOC105124742 isoform X1 [Populus euphratica]
17 Hb_001377_350 0.0805639394 - - PREDICTED: exportin-2 [Jatropha curcas]
18 Hb_001876_010 0.0810768322 - - PREDICTED: arginyl-tRNA--protein transferase 2-like isoform X1 [Jatropha curcas]
19 Hb_000192_080 0.0823075565 - - PREDICTED: serine/threonine-protein kinase SAPK3 isoform X1 [Jatropha curcas]
20 Hb_000011_060 0.0824678151 - - PREDICTED: exportin-7 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000140_210 Hb_000140_210 Hb_003544_050 Hb_003544_050 Hb_000140_210--Hb_003544_050 Hb_009296_040 Hb_009296_040 Hb_000140_210--Hb_009296_040 Hb_011016_050 Hb_011016_050 Hb_000140_210--Hb_011016_050 Hb_000066_170 Hb_000066_170 Hb_000140_210--Hb_000066_170 Hb_085781_020 Hb_085781_020 Hb_000140_210--Hb_085781_020 Hb_000028_390 Hb_000028_390 Hb_000140_210--Hb_000028_390 Hb_000809_230 Hb_000809_230 Hb_003544_050--Hb_000809_230 Hb_001377_350 Hb_001377_350 Hb_003544_050--Hb_001377_350 Hb_003544_050--Hb_009296_040 Hb_002749_060 Hb_002749_060 Hb_003544_050--Hb_002749_060 Hb_004679_030 Hb_004679_030 Hb_003544_050--Hb_004679_030 Hb_009296_040--Hb_011016_050 Hb_010142_020 Hb_010142_020 Hb_009296_040--Hb_010142_020 Hb_009296_040--Hb_000028_390 Hb_000537_050 Hb_000537_050 Hb_009296_040--Hb_000537_050 Hb_000614_240 Hb_000614_240 Hb_009296_040--Hb_000614_240 Hb_011016_050--Hb_000614_240 Hb_004030_080 Hb_004030_080 Hb_011016_050--Hb_004030_080 Hb_011016_050--Hb_010142_020 Hb_000083_120 Hb_000083_120 Hb_011016_050--Hb_000083_120 Hb_001440_030 Hb_001440_030 Hb_000066_170--Hb_001440_030 Hb_000066_170--Hb_085781_020 Hb_000592_030 Hb_000592_030 Hb_000066_170--Hb_000592_030 Hb_000066_170--Hb_000537_050 Hb_000066_170--Hb_009296_040 Hb_071130_010 Hb_071130_010 Hb_085781_020--Hb_071130_010 Hb_000230_260 Hb_000230_260 Hb_085781_020--Hb_000230_260 Hb_003060_060 Hb_003060_060 Hb_085781_020--Hb_003060_060 Hb_002639_080 Hb_002639_080 Hb_085781_020--Hb_002639_080 Hb_001876_010 Hb_001876_010 Hb_000028_390--Hb_001876_010 Hb_000174_180 Hb_000174_180 Hb_000028_390--Hb_000174_180 Hb_004449_080 Hb_004449_080 Hb_000028_390--Hb_004449_080 Hb_000011_060 Hb_000011_060 Hb_000028_390--Hb_000011_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.60415 11.7244 7.03556 15.5406 7.72104 14.3695
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.2227 6.97498 13.9962 16.8706 12.9275

CAGE analysis