Hb_010142_020

Information

Type -
Description -
Location Contig10142: 8877-18524
Sequence    

Annotation

kegg
ID rcu:RCOM_1037490
description hypothetical protein
nr
ID XP_002513976.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q658Y4
description Protein FAM91A1 OS=Homo sapiens GN=FAM91A1 PE=1 SV=3
trembl
ID B9RJQ7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1037490 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00723: 9359-13741 , PASA_asmbl_00724: 13997-18190 , PASA_asmbl_00726: 18266-18618
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010142_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_011063_050 0.0392655736 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17670 [Jatropha curcas]
3 Hb_002989_020 0.0503158482 - - PREDICTED: uncharacterized protein LOC105630013 isoform X2 [Jatropha curcas]
4 Hb_000614_240 0.0547756097 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
5 Hb_001500_140 0.0548177016 - - pelota, putative [Ricinus communis]
6 Hb_000140_290 0.0567465926 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 [Populus euphratica]
7 Hb_003683_020 0.0571341988 - - serine/threonine protein kinase, putative [Ricinus communis]
8 Hb_002026_150 0.0593171392 transcription factor TF Family: SNF2 PREDICTED: DNA repair helicase XPB1 isoform X1 [Jatropha curcas]
9 Hb_009296_040 0.0594386908 - - hypothetical protein L484_007435 [Morus notabilis]
10 Hb_012498_010 0.0596441844 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-2 [Jatropha curcas]
11 Hb_011016_050 0.0611487319 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 isoform X1 [Jatropha curcas]
12 Hb_010515_020 0.0618980464 - - PREDICTED: protein transport protein SEC23-like [Jatropha curcas]
13 Hb_000011_060 0.0621875466 - - PREDICTED: exportin-7 isoform X1 [Jatropha curcas]
14 Hb_102698_010 0.0657529785 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]
15 Hb_000138_100 0.0664974608 - - bifunctional purine biosynthesis protein, putative [Ricinus communis]
16 Hb_001999_310 0.0665881337 - - PREDICTED: lysosomal beta glucosidase-like [Jatropha curcas]
17 Hb_004109_080 0.0689160228 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like isoform X1 [Populus euphratica]
18 Hb_000890_060 0.0690847881 - - PREDICTED: sucrose nonfermenting 4-like protein [Jatropha curcas]
19 Hb_000111_290 0.0693795183 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
20 Hb_005663_110 0.069521046 - - PREDICTED: large proline-rich protein BAG6 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_010142_020 Hb_010142_020 Hb_011063_050 Hb_011063_050 Hb_010142_020--Hb_011063_050 Hb_002989_020 Hb_002989_020 Hb_010142_020--Hb_002989_020 Hb_000614_240 Hb_000614_240 Hb_010142_020--Hb_000614_240 Hb_001500_140 Hb_001500_140 Hb_010142_020--Hb_001500_140 Hb_000140_290 Hb_000140_290 Hb_010142_020--Hb_000140_290 Hb_003683_020 Hb_003683_020 Hb_010142_020--Hb_003683_020 Hb_011063_050--Hb_002989_020 Hb_000340_530 Hb_000340_530 Hb_011063_050--Hb_000340_530 Hb_001679_050 Hb_001679_050 Hb_011063_050--Hb_001679_050 Hb_093458_040 Hb_093458_040 Hb_011063_050--Hb_093458_040 Hb_010515_020 Hb_010515_020 Hb_011063_050--Hb_010515_020 Hb_002989_020--Hb_000340_530 Hb_002989_020--Hb_093458_040 Hb_000477_050 Hb_000477_050 Hb_002989_020--Hb_000477_050 Hb_002989_020--Hb_001679_050 Hb_001999_310 Hb_001999_310 Hb_000614_240--Hb_001999_310 Hb_000111_290 Hb_000111_290 Hb_000614_240--Hb_000111_290 Hb_011016_050 Hb_011016_050 Hb_000614_240--Hb_011016_050 Hb_000011_060 Hb_000011_060 Hb_000614_240--Hb_000011_060 Hb_002456_010 Hb_002456_010 Hb_000614_240--Hb_002456_010 Hb_001584_120 Hb_001584_120 Hb_001500_140--Hb_001584_120 Hb_001500_140--Hb_093458_040 Hb_001500_140--Hb_001999_310 Hb_001500_140--Hb_000140_290 Hb_000574_450 Hb_000574_450 Hb_001500_140--Hb_000574_450 Hb_005634_010 Hb_005634_010 Hb_000140_290--Hb_005634_010 Hb_000556_120 Hb_000556_120 Hb_000140_290--Hb_000556_120 Hb_000140_290--Hb_093458_040 Hb_013726_090 Hb_013726_090 Hb_000140_290--Hb_013726_090 Hb_012498_010 Hb_012498_010 Hb_003683_020--Hb_012498_010 Hb_013399_020 Hb_013399_020 Hb_003683_020--Hb_013399_020 Hb_003528_030 Hb_003528_030 Hb_003683_020--Hb_003528_030 Hb_000159_090 Hb_000159_090 Hb_003683_020--Hb_000159_090 Hb_000260_330 Hb_000260_330 Hb_003683_020--Hb_000260_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.39947 5.59307 4.37704 8.57668 5.60987 5.68316
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.57527 4.91512 6.19706 8.49051 6.87986

CAGE analysis