Hb_005634_010

Information

Type -
Description -
Location Contig5634: 7038-11781
Sequence    

Annotation

kegg
ID rcu:RCOM_0976080
description WD-repeat protein, putative
nr
ID XP_002521240.1
description WD-repeat protein, putative [Ricinus communis]
swissprot
ID Q8N7N5
description DDB1- and CUL4-associated factor 8 OS=Mus musculus GN=Dcaf8 PE=1 SV=1
trembl
ID B9S5H1
description WD-repeat protein, putative OS=Ricinus communis GN=RCOM_0976080 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48955: 7164-11696 , PASA_asmbl_48956: 11168-11346
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005634_010 0.0 - - WD-repeat protein, putative [Ricinus communis]
2 Hb_000556_120 0.053938797 - - Spastin, putative [Ricinus communis]
3 Hb_000140_290 0.0553259169 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 [Populus euphratica]
4 Hb_000329_060 0.0688293717 - - chloroplast 5-enolpyruvylshikimate 3-phosphate synthase [Hevea brasiliensis]
5 Hb_000011_060 0.069265271 - - PREDICTED: exportin-7 isoform X1 [Jatropha curcas]
6 Hb_000836_460 0.0697873661 - - PREDICTED: uncharacterized protein LOC105628435 [Jatropha curcas]
7 Hb_003544_060 0.0701381151 - - hypothetical protein JCGZ_22100 [Jatropha curcas]
8 Hb_000580_120 0.0702569289 - - PREDICTED: transketolase, chloroplastic [Jatropha curcas]
9 Hb_000392_420 0.0707371294 - - PREDICTED: probable aldehyde dehydrogenase isoform X1 [Jatropha curcas]
10 Hb_011218_090 0.0748469528 - - PREDICTED: autophagy-related protein 18a [Jatropha curcas]
11 Hb_000029_140 0.0785326301 - - PREDICTED: putative GDP-L-fucose synthase 2 [Populus euphratica]
12 Hb_005396_150 0.0789321388 - - protein binding protein, putative [Ricinus communis]
13 Hb_003058_120 0.0789822741 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 4 homolog [Jatropha curcas]
14 Hb_000028_180 0.0792334637 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
15 Hb_002026_150 0.0802888303 transcription factor TF Family: SNF2 PREDICTED: DNA repair helicase XPB1 isoform X1 [Jatropha curcas]
16 Hb_001252_120 0.0805082794 - - PREDICTED: delta-1-pyrroline-5-carboxylate synthase-like [Gossypium raimondii]
17 Hb_000778_010 0.0812161455 - - hypothetical protein [Bacillus subtilis]
18 Hb_000349_260 0.0814661966 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
19 Hb_000120_080 0.0815934959 - - PREDICTED: probable pyridoxal 5'-phosphate synthase subunit PDX1 [Jatropha curcas]
20 Hb_002007_080 0.0824438316 - - PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Jatropha curcas]

Gene co-expression network

sample Hb_005634_010 Hb_005634_010 Hb_000556_120 Hb_000556_120 Hb_005634_010--Hb_000556_120 Hb_000140_290 Hb_000140_290 Hb_005634_010--Hb_000140_290 Hb_000329_060 Hb_000329_060 Hb_005634_010--Hb_000329_060 Hb_000011_060 Hb_000011_060 Hb_005634_010--Hb_000011_060 Hb_000836_460 Hb_000836_460 Hb_005634_010--Hb_000836_460 Hb_003544_060 Hb_003544_060 Hb_005634_010--Hb_003544_060 Hb_000556_120--Hb_000329_060 Hb_000556_120--Hb_000140_290 Hb_001876_050 Hb_001876_050 Hb_000556_120--Hb_001876_050 Hb_004324_130 Hb_004324_130 Hb_000556_120--Hb_004324_130 Hb_001252_120 Hb_001252_120 Hb_000556_120--Hb_001252_120 Hb_010142_020 Hb_010142_020 Hb_000140_290--Hb_010142_020 Hb_001500_140 Hb_001500_140 Hb_000140_290--Hb_001500_140 Hb_093458_040 Hb_093458_040 Hb_000140_290--Hb_093458_040 Hb_013726_090 Hb_013726_090 Hb_000140_290--Hb_013726_090 Hb_000381_120 Hb_000381_120 Hb_000329_060--Hb_000381_120 Hb_000329_060--Hb_000140_290 Hb_005357_160 Hb_005357_160 Hb_000329_060--Hb_005357_160 Hb_000329_060--Hb_000836_460 Hb_001876_010 Hb_001876_010 Hb_000011_060--Hb_001876_010 Hb_000011_060--Hb_013726_090 Hb_000614_240 Hb_000614_240 Hb_000011_060--Hb_000614_240 Hb_000984_170 Hb_000984_170 Hb_000011_060--Hb_000984_170 Hb_000011_060--Hb_010142_020 Hb_001105_020 Hb_001105_020 Hb_000011_060--Hb_001105_020 Hb_000258_110 Hb_000258_110 Hb_000836_460--Hb_000258_110 Hb_000836_460--Hb_003544_060 Hb_004586_220 Hb_004586_220 Hb_000836_460--Hb_004586_220 Hb_003020_100 Hb_003020_100 Hb_000836_460--Hb_003020_100 Hb_005918_010 Hb_005918_010 Hb_003544_060--Hb_005918_010 Hb_002456_010 Hb_002456_010 Hb_003544_060--Hb_002456_010 Hb_003906_200 Hb_003906_200 Hb_003544_060--Hb_003906_200 Hb_002234_090 Hb_002234_090 Hb_003544_060--Hb_002234_090 Hb_011618_090 Hb_011618_090 Hb_003544_060--Hb_011618_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.2263 15.8604 18.1693 24.0257 12.2822 12.832
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.4648 13.2461 21.0985 26.3551 16.929

CAGE analysis