Hb_003020_100

Information

Type -
Description -
Location Contig3020: 60712-66809
Sequence    

Annotation

kegg
ID rcu:RCOM_0733160
description protein with unknown function
nr
ID XP_012066966.1
description PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]
swissprot
ID Q9USU9
description Transcription initiation factor IIA large subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=toa1 PE=1 SV=1
trembl
ID A0A067L1A3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02941 PE=4 SV=1
Gene Ontology
ID GO:0010467
description transcription initiation factor iia large subunit-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31837: 60688-66713 , PASA_asmbl_31838: 64391-64593
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003020_100 0.0 - - PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]
2 Hb_000322_080 0.0557904422 - - hypothetical protein JCGZ_07423 [Jatropha curcas]
3 Hb_006006_040 0.0574083725 - - S-methyl-5-thioribose kinase isoform 2 [Theobroma cacao]
4 Hb_001500_100 0.061499711 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000085_450 0.0620533044 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]
6 Hb_000836_460 0.0706961911 - - PREDICTED: uncharacterized protein LOC105628435 [Jatropha curcas]
7 Hb_021165_010 0.0734619963 - - PREDICTED: splicing factor U2af large subunit B-like isoform X1 [Jatropha curcas]
8 Hb_001434_080 0.0754351545 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
9 Hb_015026_130 0.0795792419 - - quinone oxidoreductase, putative [Ricinus communis]
10 Hb_000215_300 0.0797341619 - - mitochondrial processing peptidase alpha subunit, putative [Ricinus communis]
11 Hb_000327_250 0.0803271708 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
12 Hb_001114_110 0.0807532977 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
13 Hb_004705_170 0.0808484305 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]
14 Hb_000089_180 0.0821597781 - - PREDICTED: homoserine kinase-like [Jatropha curcas]
15 Hb_000023_300 0.0823513011 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
16 Hb_003544_030 0.0827090572 - - PREDICTED: citrate synthase, glyoxysomal [Jatropha curcas]
17 Hb_006452_120 0.0848144153 - - PREDICTED: protein FAM188A [Jatropha curcas]
18 Hb_000258_110 0.0864532812 - - PREDICTED: probable apyrase 6 isoform X1 [Jatropha curcas]
19 Hb_000017_230 0.0865509537 - - hypothetical protein JCGZ_20558 [Jatropha curcas]
20 Hb_004037_020 0.0867668969 - - PREDICTED: uncharacterized protein LOC105632366 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003020_100 Hb_003020_100 Hb_000322_080 Hb_000322_080 Hb_003020_100--Hb_000322_080 Hb_006006_040 Hb_006006_040 Hb_003020_100--Hb_006006_040 Hb_001500_100 Hb_001500_100 Hb_003020_100--Hb_001500_100 Hb_000085_450 Hb_000085_450 Hb_003020_100--Hb_000085_450 Hb_000836_460 Hb_000836_460 Hb_003020_100--Hb_000836_460 Hb_021165_010 Hb_021165_010 Hb_003020_100--Hb_021165_010 Hb_000322_080--Hb_001500_100 Hb_000787_160 Hb_000787_160 Hb_000322_080--Hb_000787_160 Hb_102698_010 Hb_102698_010 Hb_000322_080--Hb_102698_010 Hb_000046_500 Hb_000046_500 Hb_000322_080--Hb_000046_500 Hb_000477_100 Hb_000477_100 Hb_000322_080--Hb_000477_100 Hb_005215_020 Hb_005215_020 Hb_006006_040--Hb_005215_020 Hb_006006_040--Hb_000085_450 Hb_001329_200 Hb_001329_200 Hb_006006_040--Hb_001329_200 Hb_001328_080 Hb_001328_080 Hb_006006_040--Hb_001328_080 Hb_007409_040 Hb_007409_040 Hb_006006_040--Hb_007409_040 Hb_019280_010 Hb_019280_010 Hb_001500_100--Hb_019280_010 Hb_003544_050 Hb_003544_050 Hb_001500_100--Hb_003544_050 Hb_001434_080 Hb_001434_080 Hb_001500_100--Hb_001434_080 Hb_006452_120 Hb_006452_120 Hb_001500_100--Hb_006452_120 Hb_015026_130 Hb_015026_130 Hb_000085_450--Hb_015026_130 Hb_000089_180 Hb_000089_180 Hb_000085_450--Hb_000089_180 Hb_086063_020 Hb_086063_020 Hb_000085_450--Hb_086063_020 Hb_007137_050 Hb_007137_050 Hb_000085_450--Hb_007137_050 Hb_004037_020 Hb_004037_020 Hb_000085_450--Hb_004037_020 Hb_000258_110 Hb_000258_110 Hb_000836_460--Hb_000258_110 Hb_003544_060 Hb_003544_060 Hb_000836_460--Hb_003544_060 Hb_004586_220 Hb_004586_220 Hb_000836_460--Hb_004586_220 Hb_005634_010 Hb_005634_010 Hb_000836_460--Hb_005634_010 Hb_000329_060 Hb_000329_060 Hb_000836_460--Hb_000329_060 Hb_000702_090 Hb_000702_090 Hb_021165_010--Hb_000702_090 Hb_016172_030 Hb_016172_030 Hb_021165_010--Hb_016172_030 Hb_008289_040 Hb_008289_040 Hb_021165_010--Hb_008289_040 Hb_000017_230 Hb_000017_230 Hb_021165_010--Hb_000017_230 Hb_060980_010 Hb_060980_010 Hb_021165_010--Hb_060980_010 Hb_001114_110 Hb_001114_110 Hb_021165_010--Hb_001114_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.58021 7.91088 8.23558 13.2331 3.99258 6.0378
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.62455 4.69955 5.70418 12.4132 6.68577

CAGE analysis