Hb_007409_040

Information

Type -
Description -
Location Contig7409: 64390-67645
Sequence    

Annotation

kegg
ID pop:POPTR_0001s31700g
description POPTRDRAFT_813612; actin family protein
nr
ID XP_002298710.1
description actin family protein [Populus trichocarpa]
swissprot
ID P53492
description Actin-7 OS=Arabidopsis thaliana GN=ACT7 PE=1 SV=1
trembl
ID A0A0A0YMU1
description Actin OS=Panax notoginseng GN=act1 PE=2 SV=1
Gene Ontology
ID GO:0005618
description actin

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56385: 64542-67554
cDNA
(Sanger)
(ID:Location)		 003_G01.ab1: 64542-66498 , 008_L14.ab1: 64542-66415 , 010_B07.ab1: 64542-66127 , 023_E16.ab1: 64542-66402

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007409_040 0.0 - - actin family protein [Populus trichocarpa]
2 Hb_006006_040 0.0790061617 - - S-methyl-5-thioribose kinase isoform 2 [Theobroma cacao]
3 Hb_146051_010 0.0831166474 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
4 Hb_001454_230 0.0929380688 - - PREDICTED: kinesin-13A isoform X1 [Jatropha curcas]
5 Hb_001500_100 0.0936477715 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001051_070 0.0962760553 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X2 [Jatropha curcas]
7 Hb_001114_110 0.0976590725 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
8 Hb_003020_100 0.0977189267 - - PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]
9 Hb_002982_020 0.097784222 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
10 Hb_003544_030 0.0988178467 - - PREDICTED: citrate synthase, glyoxysomal [Jatropha curcas]
11 Hb_032969_020 0.0998308521 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000460_080 0.1004809955 - - acyl-coenzyme A binding domain containing, putative [Ricinus communis]
13 Hb_002728_080 0.100941762 - - WD-repeat protein, putative [Ricinus communis]
14 Hb_005188_030 0.100974456 - - amino acid transporter, putative [Ricinus communis]
15 Hb_000679_100 0.1018240797 - - PREDICTED: probable sugar phosphate/phosphate translocator At5g25400 isoform X1 [Jatropha curcas]
16 Hb_001329_200 0.1018427344 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 1 [Jatropha curcas]
17 Hb_006452_120 0.1031809108 - - PREDICTED: protein FAM188A [Jatropha curcas]
18 Hb_001097_040 0.1057982872 - - PREDICTED: probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3B [Jatropha curcas]
19 Hb_000477_100 0.1064805145 - - PREDICTED: GDP-mannose transporter GONST4 [Jatropha curcas]
20 Hb_000023_300 0.1066912141 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]

Gene co-expression network

sample Hb_007409_040 Hb_007409_040 Hb_006006_040 Hb_006006_040 Hb_007409_040--Hb_006006_040 Hb_146051_010 Hb_146051_010 Hb_007409_040--Hb_146051_010 Hb_001454_230 Hb_001454_230 Hb_007409_040--Hb_001454_230 Hb_001500_100 Hb_001500_100 Hb_007409_040--Hb_001500_100 Hb_001051_070 Hb_001051_070 Hb_007409_040--Hb_001051_070 Hb_001114_110 Hb_001114_110 Hb_007409_040--Hb_001114_110 Hb_003020_100 Hb_003020_100 Hb_006006_040--Hb_003020_100 Hb_005215_020 Hb_005215_020 Hb_006006_040--Hb_005215_020 Hb_000085_450 Hb_000085_450 Hb_006006_040--Hb_000085_450 Hb_001329_200 Hb_001329_200 Hb_006006_040--Hb_001329_200 Hb_001328_080 Hb_001328_080 Hb_006006_040--Hb_001328_080 Hb_001157_200 Hb_001157_200 Hb_146051_010--Hb_001157_200 Hb_032969_020 Hb_032969_020 Hb_146051_010--Hb_032969_020 Hb_000172_100 Hb_000172_100 Hb_146051_010--Hb_000172_100 Hb_003544_030 Hb_003544_030 Hb_146051_010--Hb_003544_030 Hb_006452_120 Hb_006452_120 Hb_146051_010--Hb_006452_120 Hb_001252_090 Hb_001252_090 Hb_001454_230--Hb_001252_090 Hb_012262_030 Hb_012262_030 Hb_001454_230--Hb_012262_030 Hb_000703_190 Hb_000703_190 Hb_001454_230--Hb_000703_190 Hb_000046_500 Hb_000046_500 Hb_001454_230--Hb_000046_500 Hb_011214_160 Hb_011214_160 Hb_001454_230--Hb_011214_160 Hb_000023_300 Hb_000023_300 Hb_001454_230--Hb_000023_300 Hb_001500_100--Hb_003020_100 Hb_000322_080 Hb_000322_080 Hb_001500_100--Hb_000322_080 Hb_019280_010 Hb_019280_010 Hb_001500_100--Hb_019280_010 Hb_003544_050 Hb_003544_050 Hb_001500_100--Hb_003544_050 Hb_001434_080 Hb_001434_080 Hb_001500_100--Hb_001434_080 Hb_001500_100--Hb_006452_120 Hb_000477_100 Hb_000477_100 Hb_001051_070--Hb_000477_100 Hb_007286_020 Hb_007286_020 Hb_001051_070--Hb_007286_020 Hb_001051_070--Hb_000023_300 Hb_001051_070--Hb_011214_160 Hb_003998_040 Hb_003998_040 Hb_001051_070--Hb_003998_040 Hb_000679_100 Hb_000679_100 Hb_001051_070--Hb_000679_100 Hb_015026_130 Hb_015026_130 Hb_001114_110--Hb_015026_130 Hb_021165_010 Hb_021165_010 Hb_001114_110--Hb_021165_010 Hb_000962_030 Hb_000962_030 Hb_001114_110--Hb_000962_030 Hb_031527_030 Hb_031527_030 Hb_001114_110--Hb_031527_030 Hb_016172_030 Hb_016172_030 Hb_001114_110--Hb_016172_030 Hb_001114_110--Hb_001434_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
151.486 325.356 227.135 492.354 191.934 152.489
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
197.776 118.334 272.365 341.533 165.615

CAGE analysis