Hb_005215_020

Information

Type transcription factor
Description TF Family: MYB
Location Contig5215: 88912-89949
Sequence    

Annotation

kegg
ID rcu:RCOM_1153840
description r2r3-myb transcription factor, putative
nr
ID XP_012079312.1
description PREDICTED: transcription factor MYB44 [Jatropha curcas]
swissprot
ID Q9FDW1
description Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1
trembl
ID A0A067K7A3
description MYB family protein OS=Jatropha curcas GN=JCGZ_12458 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor myb44-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 051_L13.ab1: 88646-89017

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005215_020 0.0 transcription factor TF Family: MYB PREDICTED: transcription factor MYB44 [Jatropha curcas]
2 Hb_006006_040 0.0649875685 - - S-methyl-5-thioribose kinase isoform 2 [Theobroma cacao]
3 Hb_000085_450 0.0737666956 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]
4 Hb_000089_180 0.0762244332 - - PREDICTED: homoserine kinase-like [Jatropha curcas]
5 Hb_007839_020 0.0808134756 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000656_150 0.0831680009 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
7 Hb_001328_080 0.0894766287 - - PREDICTED: importin subunit alpha-1b [Jatropha curcas]
8 Hb_015026_130 0.0898904633 - - quinone oxidoreductase, putative [Ricinus communis]
9 Hb_002915_060 0.0911372756 - - PREDICTED: serine/threonine-protein kinase CTR1-like [Jatropha curcas]
10 Hb_003020_100 0.0922039685 - - PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]
11 Hb_024650_080 0.0930843786 - - PREDICTED: BTB/POZ domain-containing protein At3g09030 [Jatropha curcas]
12 Hb_001329_200 0.0931489789 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 1 [Jatropha curcas]
13 Hb_089140_040 0.0938046015 - - PREDICTED: uncharacterized protein LOC105637966 [Jatropha curcas]
14 Hb_011360_050 0.0964155789 - - PREDICTED: BAG family molecular chaperone regulator 8, chloroplastic [Jatropha curcas]
15 Hb_004128_130 0.0991807471 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]
16 Hb_002995_040 0.0996366945 - - PREDICTED: probable serine/threonine-protein kinase dyrk1 isoform X1 [Jatropha curcas]
17 Hb_007747_080 0.0997764245 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001408_110 0.0997976253 - - hypothetical protein EUGRSUZ_I02762 [Eucalyptus grandis]
19 Hb_002982_020 0.0998978683 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
20 Hb_019280_010 0.1022703391 - - PREDICTED: F-box protein At5g39450 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_005215_020 Hb_005215_020 Hb_006006_040 Hb_006006_040 Hb_005215_020--Hb_006006_040 Hb_000085_450 Hb_000085_450 Hb_005215_020--Hb_000085_450 Hb_000089_180 Hb_000089_180 Hb_005215_020--Hb_000089_180 Hb_007839_020 Hb_007839_020 Hb_005215_020--Hb_007839_020 Hb_000656_150 Hb_000656_150 Hb_005215_020--Hb_000656_150 Hb_001328_080 Hb_001328_080 Hb_005215_020--Hb_001328_080 Hb_003020_100 Hb_003020_100 Hb_006006_040--Hb_003020_100 Hb_006006_040--Hb_000085_450 Hb_001329_200 Hb_001329_200 Hb_006006_040--Hb_001329_200 Hb_006006_040--Hb_001328_080 Hb_007409_040 Hb_007409_040 Hb_006006_040--Hb_007409_040 Hb_015026_130 Hb_015026_130 Hb_000085_450--Hb_015026_130 Hb_000085_450--Hb_000089_180 Hb_000085_450--Hb_003020_100 Hb_086063_020 Hb_086063_020 Hb_000085_450--Hb_086063_020 Hb_007137_050 Hb_007137_050 Hb_000085_450--Hb_007137_050 Hb_004037_020 Hb_004037_020 Hb_000085_450--Hb_004037_020 Hb_004128_130 Hb_004128_130 Hb_000089_180--Hb_004128_130 Hb_000089_180--Hb_015026_130 Hb_004143_100 Hb_004143_100 Hb_000089_180--Hb_004143_100 Hb_001408_110 Hb_001408_110 Hb_000089_180--Hb_001408_110 Hb_000089_180--Hb_004037_020 Hb_010407_080 Hb_010407_080 Hb_007839_020--Hb_010407_080 Hb_011360_050 Hb_011360_050 Hb_007839_020--Hb_011360_050 Hb_007839_020--Hb_001329_200 Hb_007839_020--Hb_001328_080 Hb_007839_020--Hb_001408_110 Hb_022425_060 Hb_022425_060 Hb_007839_020--Hb_022425_060 Hb_002995_040 Hb_002995_040 Hb_000656_150--Hb_002995_040 Hb_001673_060 Hb_001673_060 Hb_000656_150--Hb_001673_060 Hb_000340_080 Hb_000340_080 Hb_000656_150--Hb_000340_080 Hb_000656_150--Hb_000085_450 Hb_004125_130 Hb_004125_130 Hb_000656_150--Hb_004125_130 Hb_001328_080--Hb_001329_200 Hb_002915_060 Hb_002915_060 Hb_001328_080--Hb_002915_060 Hb_023344_150 Hb_023344_150 Hb_001328_080--Hb_023344_150 Hb_000926_260 Hb_000926_260 Hb_001328_080--Hb_000926_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.97898 14.5104 8.41539 16.1143 4.91011 4.30141
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.25792 5.36602 5.54712 13.6395 8.04002

CAGE analysis