Hb_004125_130

Information

Type -
Description -
Location Contig4125: 76401-87767
Sequence    

Annotation

kegg
ID rcu:RCOM_1169130
description hypothetical protein
nr
ID XP_012069860.1
description PREDICTED: uncharacterized protein LOC105632153 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KZF5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02351 PE=4 SV=1
Gene Ontology
ID GO:0016020
description cop1-interacting isoform 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40827: 76412-82570 , PASA_asmbl_40828: 76412-81693 , PASA_asmbl_40829: 83842-87460
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004125_130 0.0 - - PREDICTED: uncharacterized protein LOC105632153 [Jatropha curcas]
2 Hb_022425_030 0.0975872208 - - PREDICTED: casein kinase I [Jatropha curcas]
3 Hb_002889_020 0.0987686707 - - PREDICTED: mitogen-activated protein kinase kinase 3 [Jatropha curcas]
4 Hb_022425_060 0.1037857682 - - PREDICTED: protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1 [Jatropha curcas]
5 Hb_000347_300 0.1051718767 - - PREDICTED: cation/calcium exchanger 4-like [Jatropha curcas]
6 Hb_000656_150 0.1054461095 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
7 Hb_000024_040 0.1064095916 - - PREDICTED: ALG-2 interacting protein X [Jatropha curcas]
8 Hb_001257_030 0.1067335563 - - PREDICTED: serine/threonine-protein kinase Nek5 [Jatropha curcas]
9 Hb_000789_250 0.1072436104 - - PREDICTED: uncharacterized protein LOC105637809 [Jatropha curcas]
10 Hb_003544_060 0.109409877 - - hypothetical protein JCGZ_22100 [Jatropha curcas]
11 Hb_000059_240 0.1102336198 - - PREDICTED: protein FRIGIDA [Jatropha curcas]
12 Hb_005551_020 0.1105467593 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
13 Hb_001635_120 0.1105739758 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
14 Hb_010407_080 0.1109395284 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT35 isoform X1 [Jatropha curcas]
15 Hb_001828_170 0.1117952598 - - PREDICTED: protein TPLATE [Jatropha curcas]
16 Hb_005215_020 0.1122037315 transcription factor TF Family: MYB PREDICTED: transcription factor MYB44 [Jatropha curcas]
17 Hb_004449_130 0.1123173279 - - PREDICTED: exportin-7 isoform X1 [Jatropha curcas]
18 Hb_000008_240 0.1124870615 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002276_040 0.1128028795 - - PREDICTED: sodium-coupled neutral amino acid transporter 3-like [Jatropha curcas]
20 Hb_011618_070 0.1131761778 - - NMDA receptor-regulated protein [Medicago truncatula]

Gene co-expression network

sample Hb_004125_130 Hb_004125_130 Hb_022425_030 Hb_022425_030 Hb_004125_130--Hb_022425_030 Hb_002889_020 Hb_002889_020 Hb_004125_130--Hb_002889_020 Hb_022425_060 Hb_022425_060 Hb_004125_130--Hb_022425_060 Hb_000347_300 Hb_000347_300 Hb_004125_130--Hb_000347_300 Hb_000656_150 Hb_000656_150 Hb_004125_130--Hb_000656_150 Hb_000024_040 Hb_000024_040 Hb_004125_130--Hb_000024_040 Hb_004044_050 Hb_004044_050 Hb_022425_030--Hb_004044_050 Hb_022425_030--Hb_000347_300 Hb_000008_240 Hb_000008_240 Hb_022425_030--Hb_000008_240 Hb_024650_080 Hb_024650_080 Hb_022425_030--Hb_024650_080 Hb_031527_030 Hb_031527_030 Hb_022425_030--Hb_031527_030 Hb_001828_170 Hb_001828_170 Hb_022425_030--Hb_001828_170 Hb_000003_100 Hb_000003_100 Hb_002889_020--Hb_000003_100 Hb_000331_580 Hb_000331_580 Hb_002889_020--Hb_000331_580 Hb_011618_090 Hb_011618_090 Hb_002889_020--Hb_011618_090 Hb_012286_040 Hb_012286_040 Hb_002889_020--Hb_012286_040 Hb_019840_030 Hb_019840_030 Hb_002889_020--Hb_019840_030 Hb_001167_050 Hb_001167_050 Hb_002889_020--Hb_001167_050 Hb_022425_060--Hb_001828_170 Hb_020805_150 Hb_020805_150 Hb_022425_060--Hb_020805_150 Hb_001329_200 Hb_001329_200 Hb_022425_060--Hb_001329_200 Hb_010407_080 Hb_010407_080 Hb_022425_060--Hb_010407_080 Hb_007839_020 Hb_007839_020 Hb_022425_060--Hb_007839_020 Hb_003918_030 Hb_003918_030 Hb_022425_060--Hb_003918_030 Hb_000347_300--Hb_001828_170 Hb_002817_060 Hb_002817_060 Hb_000347_300--Hb_002817_060 Hb_000347_300--Hb_004044_050 Hb_000347_300--Hb_022425_060 Hb_002686_140 Hb_002686_140 Hb_000347_300--Hb_002686_140 Hb_005215_020 Hb_005215_020 Hb_000656_150--Hb_005215_020 Hb_002995_040 Hb_002995_040 Hb_000656_150--Hb_002995_040 Hb_001673_060 Hb_001673_060 Hb_000656_150--Hb_001673_060 Hb_000340_080 Hb_000340_080 Hb_000656_150--Hb_000340_080 Hb_000085_450 Hb_000085_450 Hb_000656_150--Hb_000085_450 Hb_000347_390 Hb_000347_390 Hb_000024_040--Hb_000347_390 Hb_001628_070 Hb_001628_070 Hb_000024_040--Hb_001628_070 Hb_000703_200 Hb_000703_200 Hb_000024_040--Hb_000703_200 Hb_004586_290 Hb_004586_290 Hb_000024_040--Hb_004586_290 Hb_004705_020 Hb_004705_020 Hb_000024_040--Hb_004705_020 Hb_000479_070 Hb_000479_070 Hb_000024_040--Hb_000479_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.1955 16.6115 9.49415 13.1953 6.11487 5.15911
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.46827 3.20295 11.4002 13.8035 11.9667

CAGE analysis