Hb_002889_020

Information

Type -
Description -
Location Contig2889: 67238-73225
Sequence    

Annotation

kegg
ID rcu:RCOM_1064110
description serine/threonine protein kinase, putative (EC:2.7.12.2)
nr
ID XP_012066235.1
description PREDICTED: mitogen-activated protein kinase kinase 3 [Jatropha curcas]
swissprot
ID O80396
description Mitogen-activated protein kinase kinase 3 OS=Arabidopsis thaliana GN=MKK3 PE=1 SV=1
trembl
ID A0A067LFI6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23806 PE=4 SV=1
Gene Ontology
ID GO:0004672
description mitogen-activated protein kinase kinase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30154: 67348-73230 , PASA_asmbl_30155: 72704-72893
cDNA
(Sanger)
(ID:Location)		 002_G24.ab1: 71677-73230

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002889_020 0.0 - - PREDICTED: mitogen-activated protein kinase kinase 3 [Jatropha curcas]
2 Hb_000003_100 0.0695975904 transcription factor TF Family: SNF2 PREDICTED: transcription termination factor 2 isoform X5 [Jatropha curcas]
3 Hb_000331_580 0.0697865817 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
4 Hb_011618_090 0.0701869344 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
5 Hb_012286_040 0.0756009252 - - PREDICTED: pre-mRNA-splicing factor RSE1 [Jatropha curcas]
6 Hb_019840_030 0.0760193866 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
7 Hb_001167_050 0.0770008083 - - PREDICTED: uncharacterized protein LOC105648014 [Jatropha curcas]
8 Hb_000008_240 0.0776805589 - - conserved hypothetical protein [Ricinus communis]
9 Hb_006531_020 0.0780129607 - - PREDICTED: autophagy-related protein 13 [Jatropha curcas]
10 Hb_000565_040 0.0793059085 - - RecName: Full=Superoxide dismutase [Mn], mitochondrial; Flags: Precursor [Hevea brasiliensis]
11 Hb_002357_070 0.0802109621 transcription factor TF Family: PHD PREDICTED: protein strawberry notch homolog 1 [Jatropha curcas]
12 Hb_012092_060 0.0804760898 - - PREDICTED: KH domain-containing protein At4g18375 [Jatropha curcas]
13 Hb_005568_040 0.0814072414 - - PREDICTED: uncharacterized protein LOC105628163 isoform X2 [Jatropha curcas]
14 Hb_000009_120 0.0819363132 - - PREDICTED: probable Xaa-Pro aminopeptidase P isoform X1 [Jatropha curcas]
15 Hb_001628_070 0.0828471247 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
16 Hb_031527_030 0.0835267828 - - PREDICTED: ribosomal RNA processing protein 1 homolog [Jatropha curcas]
17 Hb_005074_020 0.0843253965 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
18 Hb_000608_230 0.0849939951 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
19 Hb_004586_290 0.0855343138 - - PREDICTED: transport inhibitor response 1-like protein [Jatropha curcas]
20 Hb_022425_030 0.0862445411 - - PREDICTED: casein kinase I [Jatropha curcas]

Gene co-expression network

sample Hb_002889_020 Hb_002889_020 Hb_000003_100 Hb_000003_100 Hb_002889_020--Hb_000003_100 Hb_000331_580 Hb_000331_580 Hb_002889_020--Hb_000331_580 Hb_011618_090 Hb_011618_090 Hb_002889_020--Hb_011618_090 Hb_012286_040 Hb_012286_040 Hb_002889_020--Hb_012286_040 Hb_019840_030 Hb_019840_030 Hb_002889_020--Hb_019840_030 Hb_001167_050 Hb_001167_050 Hb_002889_020--Hb_001167_050 Hb_003216_090 Hb_003216_090 Hb_000003_100--Hb_003216_090 Hb_000003_100--Hb_000331_580 Hb_002890_130 Hb_002890_130 Hb_000003_100--Hb_002890_130 Hb_005563_060 Hb_005563_060 Hb_000003_100--Hb_005563_060 Hb_000003_100--Hb_012286_040 Hb_000008_240 Hb_000008_240 Hb_000003_100--Hb_000008_240 Hb_000331_580--Hb_000008_240 Hb_005568_040 Hb_005568_040 Hb_000331_580--Hb_005568_040 Hb_002007_110 Hb_002007_110 Hb_000331_580--Hb_002007_110 Hb_123531_010 Hb_123531_010 Hb_000331_580--Hb_123531_010 Hb_006531_020 Hb_006531_020 Hb_000331_580--Hb_006531_020 Hb_003835_070 Hb_003835_070 Hb_011618_090--Hb_003835_070 Hb_000317_370 Hb_000317_370 Hb_011618_090--Hb_000317_370 Hb_000579_230 Hb_000579_230 Hb_011618_090--Hb_000579_230 Hb_000922_360 Hb_000922_360 Hb_011618_090--Hb_000922_360 Hb_003544_060 Hb_003544_060 Hb_011618_090--Hb_003544_060 Hb_007083_030 Hb_007083_030 Hb_011618_090--Hb_007083_030 Hb_031527_030 Hb_031527_030 Hb_012286_040--Hb_031527_030 Hb_002749_060 Hb_002749_060 Hb_012286_040--Hb_002749_060 Hb_041327_010 Hb_041327_010 Hb_012286_040--Hb_041327_010 Hb_012286_040--Hb_002890_130 Hb_012092_060 Hb_012092_060 Hb_012286_040--Hb_012092_060 Hb_060980_010 Hb_060980_010 Hb_019840_030--Hb_060980_010 Hb_002596_060 Hb_002596_060 Hb_019840_030--Hb_002596_060 Hb_007747_170 Hb_007747_170 Hb_019840_030--Hb_007747_170 Hb_001221_180 Hb_001221_180 Hb_019840_030--Hb_001221_180 Hb_001085_290 Hb_001085_290 Hb_019840_030--Hb_001085_290 Hb_027506_010 Hb_027506_010 Hb_019840_030--Hb_027506_010 Hb_001167_050--Hb_000331_580 Hb_001167_050--Hb_005568_040 Hb_000010_420 Hb_000010_420 Hb_001167_050--Hb_000010_420 Hb_004645_070 Hb_004645_070 Hb_001167_050--Hb_004645_070 Hb_001167_050--Hb_012286_040 Hb_001951_170 Hb_001951_170 Hb_001167_050--Hb_001951_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.6738 19.2803 11.4644 13.1052 8.45129 9.48303
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.85549 5.91946 8.91666 21.2588 13.0904

CAGE analysis