Hb_019840_030

Information

Type -
Description -
Location Contig19840: 44700-50134
Sequence    

Annotation

kegg
ID rcu:RCOM_0641960
description nucleic acid binding protein, putative
nr
ID XP_012080768.1
description PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
swissprot
ID P58223
description KH domain-containing protein At4g18375 OS=Arabidopsis thaliana GN=At4g18375 PE=2 SV=1
trembl
ID A0A067LMB7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18179 PE=4 SV=1
Gene Ontology
ID GO:0003723
description kh domain-containing protein at4g18375

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19916: 45101-50307 , PASA_asmbl_19917: 45255-50307
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019840_030 0.0 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
2 Hb_060980_010 0.0494891729 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
3 Hb_002596_060 0.0504506945 - - conserved hypothetical protein [Ricinus communis]
4 Hb_007747_170 0.0621084337 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
5 Hb_001221_180 0.0664058375 - - calcineurin-like phosphoesterase [Manihot esculenta]
6 Hb_001085_290 0.0714505636 - - 26S proteasome regulatory subunit family protein [Populus trichocarpa]
7 Hb_027506_010 0.0716680587 - - PREDICTED: cullin-4 [Jatropha curcas]
8 Hb_065500_020 0.0745289273 - - Exocyst complex component sec3A isoform 1 [Theobroma cacao]
9 Hb_002889_020 0.0760193866 - - PREDICTED: mitogen-activated protein kinase kinase 3 [Jatropha curcas]
10 Hb_000001_170 0.0768035445 - - amino acid transporter, putative [Ricinus communis]
11 Hb_002357_070 0.0775833107 transcription factor TF Family: PHD PREDICTED: protein strawberry notch homolog 1 [Jatropha curcas]
12 Hb_007245_020 0.0792934475 - - PREDICTED: pre-mRNA-processing factor 17-like isoform X1 [Populus euphratica]
13 Hb_004837_280 0.0792990608 - - PREDICTED: uncharacterized protein LOC105648296 [Jatropha curcas]
14 Hb_005333_050 0.080538332 - - PREDICTED: glucose-6-phosphate isomerase 1, chloroplastic [Jatropha curcas]
15 Hb_003280_020 0.0816101667 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
16 Hb_005074_020 0.0820005915 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
17 Hb_016172_030 0.0833987397 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Jatropha curcas]
18 Hb_001587_030 0.0836557131 - - hypothetical protein JCGZ_09892 [Jatropha curcas]
19 Hb_012286_040 0.0837264751 - - PREDICTED: pre-mRNA-splicing factor RSE1 [Jatropha curcas]
20 Hb_021165_010 0.0837636378 - - PREDICTED: splicing factor U2af large subunit B-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_019840_030 Hb_019840_030 Hb_060980_010 Hb_060980_010 Hb_019840_030--Hb_060980_010 Hb_002596_060 Hb_002596_060 Hb_019840_030--Hb_002596_060 Hb_007747_170 Hb_007747_170 Hb_019840_030--Hb_007747_170 Hb_001221_180 Hb_001221_180 Hb_019840_030--Hb_001221_180 Hb_001085_290 Hb_001085_290 Hb_019840_030--Hb_001085_290 Hb_027506_010 Hb_027506_010 Hb_019840_030--Hb_027506_010 Hb_016172_030 Hb_016172_030 Hb_060980_010--Hb_016172_030 Hb_060980_010--Hb_027506_010 Hb_065500_020 Hb_065500_020 Hb_060980_010--Hb_065500_020 Hb_000409_050 Hb_000409_050 Hb_060980_010--Hb_000409_050 Hb_000001_170 Hb_000001_170 Hb_060980_010--Hb_000001_170 Hb_004837_280 Hb_004837_280 Hb_002596_060--Hb_004837_280 Hb_000122_080 Hb_000122_080 Hb_002596_060--Hb_000122_080 Hb_002596_060--Hb_060980_010 Hb_002259_080 Hb_002259_080 Hb_002596_060--Hb_002259_080 Hb_000161_210 Hb_000161_210 Hb_002596_060--Hb_000161_210 Hb_004450_070 Hb_004450_070 Hb_007747_170--Hb_004450_070 Hb_000608_230 Hb_000608_230 Hb_007747_170--Hb_000608_230 Hb_007245_020 Hb_007245_020 Hb_007747_170--Hb_007245_020 Hb_000331_580 Hb_000331_580 Hb_007747_170--Hb_000331_580 Hb_002027_190 Hb_002027_190 Hb_007747_170--Hb_002027_190 Hb_002357_070 Hb_002357_070 Hb_001221_180--Hb_002357_070 Hb_000011_270 Hb_000011_270 Hb_001221_180--Hb_000011_270 Hb_001221_180--Hb_060980_010 Hb_003093_040 Hb_003093_040 Hb_001221_180--Hb_003093_040 Hb_000568_050 Hb_000568_050 Hb_001221_180--Hb_000568_050 Hb_000088_050 Hb_000088_050 Hb_001085_290--Hb_000088_050 Hb_000017_230 Hb_000017_230 Hb_001085_290--Hb_000017_230 Hb_002007_260 Hb_002007_260 Hb_001085_290--Hb_002007_260 Hb_001552_030 Hb_001552_030 Hb_001085_290--Hb_001552_030 Hb_001085_290--Hb_060980_010 Hb_085742_010 Hb_085742_010 Hb_001085_290--Hb_085742_010 Hb_027506_010--Hb_016172_030 Hb_000206_160 Hb_000206_160 Hb_027506_010--Hb_000206_160 Hb_003758_010 Hb_003758_010 Hb_027506_010--Hb_003758_010 Hb_027506_010--Hb_000409_050 Hb_027506_010--Hb_065500_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.11333 11.6417 11.6636 12.4907 8.56845 7.30953
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.47335 3.72744 6.03228 17.7245 11.127

CAGE analysis