Hb_000001_170

Information

Type -
Description -
Location Contig1: 300968-303399
Sequence    

Annotation

kegg
ID rcu:RCOM_0423020
description amino acid transporter, putative
nr
ID XP_002524114.1
description amino acid transporter, putative [Ricinus communis]
swissprot
ID Q9SF09
description Amino acid transporter ANT1 OS=Arabidopsis thaliana GN=ANT1 PE=1 SV=1
trembl
ID B9SDP5
description Amino acid transporter, putative OS=Ricinus communis GN=RCOM_0423020 PE=4 SV=1
Gene Ontology
ID GO:0016021
description proton-coupled amino acid transporter 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00126: 300883-302321 , PASA_asmbl_00127: 301444-305359 , PASA_asmbl_00128: 303063-303281
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000001_170 0.0 - - amino acid transporter, putative [Ricinus communis]
2 Hb_060980_010 0.0607100267 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
3 Hb_012286_040 0.0649386031 - - PREDICTED: pre-mRNA-splicing factor RSE1 [Jatropha curcas]
4 Hb_102698_010 0.0670603579 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]
5 Hb_002749_060 0.0683012233 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
6 Hb_000011_270 0.0703231317 - - PREDICTED: pumilio homolog 23 [Jatropha curcas]
7 Hb_000238_030 0.0703543866 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_003280_020 0.0712921776 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
9 Hb_001552_030 0.0724528822 - - PREDICTED: galactoside 2-alpha-L-fucosyltransferase-like isoform X1 [Jatropha curcas]
10 Hb_004048_120 0.0727996866 - - PREDICTED: nuclear pore complex protein NUP160 isoform X3 [Jatropha curcas]
11 Hb_004109_370 0.0730522334 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
12 Hb_001442_060 0.0738516061 - - PREDICTED: uncharacterized protein LOC105638091 isoform X1 [Jatropha curcas]
13 Hb_001085_290 0.0766006927 - - 26S proteasome regulatory subunit family protein [Populus trichocarpa]
14 Hb_012733_070 0.0767334936 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial [Jatropha curcas]
15 Hb_019840_030 0.0768035445 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
16 Hb_008397_010 0.0774490186 - - PREDICTED: uncharacterized protein LOC105640192 isoform X2 [Jatropha curcas]
17 Hb_000568_050 0.0783136149 - - PREDICTED: endoplasmic reticulum metallopeptidase 1 isoform X2 [Jatropha curcas]
18 Hb_000284_230 0.0783939644 - - PREDICTED: uncharacterized protein At5g49945-like [Jatropha curcas]
19 Hb_004037_020 0.0786935134 - - PREDICTED: uncharacterized protein LOC105632366 isoform X1 [Jatropha curcas]
20 Hb_031527_030 0.0790582872 - - PREDICTED: ribosomal RNA processing protein 1 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000001_170 Hb_000001_170 Hb_060980_010 Hb_060980_010 Hb_000001_170--Hb_060980_010 Hb_012286_040 Hb_012286_040 Hb_000001_170--Hb_012286_040 Hb_102698_010 Hb_102698_010 Hb_000001_170--Hb_102698_010 Hb_002749_060 Hb_002749_060 Hb_000001_170--Hb_002749_060 Hb_000011_270 Hb_000011_270 Hb_000001_170--Hb_000011_270 Hb_000238_030 Hb_000238_030 Hb_000001_170--Hb_000238_030 Hb_016172_030 Hb_016172_030 Hb_060980_010--Hb_016172_030 Hb_027506_010 Hb_027506_010 Hb_060980_010--Hb_027506_010 Hb_019840_030 Hb_019840_030 Hb_060980_010--Hb_019840_030 Hb_065500_020 Hb_065500_020 Hb_060980_010--Hb_065500_020 Hb_000409_050 Hb_000409_050 Hb_060980_010--Hb_000409_050 Hb_031527_030 Hb_031527_030 Hb_012286_040--Hb_031527_030 Hb_012286_040--Hb_002749_060 Hb_041327_010 Hb_041327_010 Hb_012286_040--Hb_041327_010 Hb_000003_100 Hb_000003_100 Hb_012286_040--Hb_000003_100 Hb_002890_130 Hb_002890_130 Hb_012286_040--Hb_002890_130 Hb_012092_060 Hb_012092_060 Hb_012286_040--Hb_012092_060 Hb_004037_020 Hb_004037_020 Hb_102698_010--Hb_004037_020 Hb_000890_060 Hb_000890_060 Hb_102698_010--Hb_000890_060 Hb_003517_040 Hb_003517_040 Hb_102698_010--Hb_003517_040 Hb_010142_020 Hb_010142_020 Hb_102698_010--Hb_010142_020 Hb_102698_010--Hb_002890_130 Hb_102698_010--Hb_012286_040 Hb_003280_020 Hb_003280_020 Hb_002749_060--Hb_003280_020 Hb_000890_070 Hb_000890_070 Hb_002749_060--Hb_000890_070 Hb_011819_020 Hb_011819_020 Hb_002749_060--Hb_011819_020 Hb_004048_120 Hb_004048_120 Hb_002749_060--Hb_004048_120 Hb_001377_350 Hb_001377_350 Hb_002749_060--Hb_001377_350 Hb_002749_060--Hb_065500_020 Hb_003093_040 Hb_003093_040 Hb_000011_270--Hb_003093_040 Hb_001221_180 Hb_001221_180 Hb_000011_270--Hb_001221_180 Hb_000568_050 Hb_000568_050 Hb_000011_270--Hb_000568_050 Hb_000175_410 Hb_000175_410 Hb_000011_270--Hb_000175_410 Hb_002357_070 Hb_002357_070 Hb_000011_270--Hb_002357_070 Hb_001442_060 Hb_001442_060 Hb_000238_030--Hb_001442_060 Hb_000258_110 Hb_000258_110 Hb_000238_030--Hb_000258_110 Hb_000238_030--Hb_102698_010 Hb_012733_070 Hb_012733_070 Hb_000238_030--Hb_012733_070 Hb_086063_020 Hb_086063_020 Hb_000238_030--Hb_086063_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.20212 4.21443 3.66172 5.8441 3.71243 3.89973
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.09177 2.15987 2.02584 6.31557 5.58496

CAGE analysis