Hb_000890_060

Information

Type -
Description -
Location Contig890: 73855-80586
Sequence    

Annotation

kegg
ID gmx:100781819
description sucrose nonfermenting 4-like protein-like
nr
ID XP_012069369.1
description PREDICTED: sucrose nonfermenting 4-like protein [Jatropha curcas]
swissprot
ID Q944A6
description Sucrose nonfermenting 4-like protein OS=Arabidopsis thaliana GN=SNF4 PE=1 SV=1
trembl
ID A0A067L671
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01998 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61591: 73990-80462
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000890_060 0.0 - - PREDICTED: sucrose nonfermenting 4-like protein [Jatropha curcas]
2 Hb_000590_050 0.0517917006 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
3 Hb_000008_290 0.0579481215 - - PREDICTED: protein SAND [Jatropha curcas]
4 Hb_000327_270 0.059567675 - - PREDICTED: leukocyte receptor cluster member 8 homolog isoform X1 [Jatropha curcas]
5 Hb_001814_030 0.0602705978 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
6 Hb_007426_110 0.0604054211 - - PREDICTED: vacuolar fusion protein CCZ1 homolog isoform X2 [Jatropha curcas]
7 Hb_020378_030 0.0606888194 - - PREDICTED: protein transport protein SEC31 homolog B [Jatropha curcas]
8 Hb_003517_040 0.060955015 - - PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic [Jatropha curcas]
9 Hb_001655_030 0.0630361589 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 3 isoform X2 [Jatropha curcas]
10 Hb_002205_250 0.0633485594 - - PREDICTED: probable inactive serine/threonine-protein kinase scy1 isoform X1 [Jatropha curcas]
11 Hb_102698_010 0.065255834 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]
12 Hb_105328_020 0.0665627066 - - PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [Jatropha curcas]
13 Hb_004586_220 0.066973976 - - PREDICTED: WD and tetratricopeptide repeats protein 1 isoform X3 [Jatropha curcas]
14 Hb_012395_140 0.067734035 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
15 Hb_003168_110 0.0683869231 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: lysine-specific histone demethylase 1 homolog 1 [Jatropha curcas]
16 Hb_002263_020 0.0684138515 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
17 Hb_009270_020 0.0684833585 - - PREDICTED: LOW QUALITY PROTEIN: helicase and polymerase-containing protein TEBICHI [Jatropha curcas]
18 Hb_010142_020 0.0690847881 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002732_040 0.0705421905 - - PREDICTED: uncharacterized protein LOC105628163 isoform X1 [Jatropha curcas]
20 Hb_000679_270 0.0715614483 - - PREDICTED: putative clathrin assembly protein At2g25430 [Jatropha curcas]

Gene co-expression network

sample Hb_000890_060 Hb_000890_060 Hb_000590_050 Hb_000590_050 Hb_000890_060--Hb_000590_050 Hb_000008_290 Hb_000008_290 Hb_000890_060--Hb_000008_290 Hb_000327_270 Hb_000327_270 Hb_000890_060--Hb_000327_270 Hb_001814_030 Hb_001814_030 Hb_000890_060--Hb_001814_030 Hb_007426_110 Hb_007426_110 Hb_000890_060--Hb_007426_110 Hb_020378_030 Hb_020378_030 Hb_000890_060--Hb_020378_030 Hb_000590_050--Hb_000327_270 Hb_000590_050--Hb_020378_030 Hb_009270_020 Hb_009270_020 Hb_000590_050--Hb_009270_020 Hb_000592_030 Hb_000592_030 Hb_000590_050--Hb_000592_030 Hb_001004_060 Hb_001004_060 Hb_000590_050--Hb_001004_060 Hb_002815_030 Hb_002815_030 Hb_000008_290--Hb_002815_030 Hb_000008_290--Hb_000592_030 Hb_000613_050 Hb_000613_050 Hb_000008_290--Hb_000613_050 Hb_000617_180 Hb_000617_180 Hb_000008_290--Hb_000617_180 Hb_123903_010 Hb_123903_010 Hb_000008_290--Hb_123903_010 Hb_003680_120 Hb_003680_120 Hb_000327_270--Hb_003680_120 Hb_003504_030 Hb_003504_030 Hb_000327_270--Hb_003504_030 Hb_000708_030 Hb_000708_030 Hb_000327_270--Hb_000708_030 Hb_002732_040 Hb_002732_040 Hb_000327_270--Hb_002732_040 Hb_004586_220 Hb_004586_220 Hb_001814_030--Hb_004586_220 Hb_002205_250 Hb_002205_250 Hb_001814_030--Hb_002205_250 Hb_000614_210 Hb_000614_210 Hb_001814_030--Hb_000614_210 Hb_012395_140 Hb_012395_140 Hb_001814_030--Hb_012395_140 Hb_159558_010 Hb_159558_010 Hb_001814_030--Hb_159558_010 Hb_001814_030--Hb_020378_030 Hb_006483_110 Hb_006483_110 Hb_007426_110--Hb_006483_110 Hb_028960_020 Hb_028960_020 Hb_007426_110--Hb_028960_020 Hb_008387_020 Hb_008387_020 Hb_007426_110--Hb_008387_020 Hb_002218_090 Hb_002218_090 Hb_007426_110--Hb_002218_090 Hb_002263_020 Hb_002263_020 Hb_007426_110--Hb_002263_020 Hb_001655_030 Hb_001655_030 Hb_007426_110--Hb_001655_030 Hb_020378_030--Hb_004586_220 Hb_000441_220 Hb_000441_220 Hb_020378_030--Hb_000441_220 Hb_020378_030--Hb_000592_030 Hb_020378_030--Hb_002732_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.61438 8.77898 7.23398 9.42256 7.22691 9.86291
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.19281 6.10558 8.02817 9.81405 10.2297

CAGE analysis