Hb_001655_030

Information

Type transcription factor
Description TF Family: SNF2
Location Contig1655: 26762-34072
Sequence    

Annotation

kegg
ID pop:POPTR_0009s12350g
description POPTRDRAFT_767399; hypothetical protein
nr
ID XP_012067211.1
description PREDICTED: SNF2 domain-containing protein CLASSY 3 isoform X2 [Jatropha curcas]
swissprot
ID F4I8S3
description SNF2 domain-containing protein CLASSY 3 OS=Arabidopsis thaliana GN=CLSY3 PE=1 SV=1
trembl
ID A0A067KZZ3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26769 PE=4 SV=1
Gene Ontology
ID GO:0003677
description snf2 domain-containing protein classy 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15237: 27602-32136 , PASA_asmbl_15239: 32755-33082 , PASA_asmbl_15240: 33156-33996
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001655_030 0.0 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 3 isoform X2 [Jatropha curcas]
2 Hb_006501_090 0.0468593786 - - PREDICTED: golgin candidate 1 [Jatropha curcas]
3 Hb_011231_020 0.0484872191 - - PREDICTED: proline-, glutamic acid- and leucine-rich protein 1 isoform X2 [Jatropha curcas]
4 Hb_007426_110 0.0595083642 - - PREDICTED: vacuolar fusion protein CCZ1 homolog isoform X2 [Jatropha curcas]
5 Hb_001814_030 0.0616059134 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
6 Hb_003645_060 0.0616722999 - - PREDICTED: monodehydroascorbate reductase, chloroplastic [Jatropha curcas]
7 Hb_000890_060 0.0630361589 - - PREDICTED: sucrose nonfermenting 4-like protein [Jatropha curcas]
8 Hb_020378_030 0.0647710618 - - PREDICTED: protein transport protein SEC31 homolog B [Jatropha curcas]
9 Hb_109980_010 0.0648724338 - - PREDICTED: uncharacterized protein LOC105647182 isoform X1 [Jatropha curcas]
10 Hb_000592_030 0.0660802407 - - PREDICTED: uncharacterized protein LOC100853969 isoform X1 [Vitis vinifera]
11 Hb_004586_220 0.0668451247 - - PREDICTED: WD and tetratricopeptide repeats protein 1 isoform X3 [Jatropha curcas]
12 Hb_010174_040 0.0685670406 - - PREDICTED: T-complex protein 1 subunit epsilon [Jatropha curcas]
13 Hb_000441_220 0.0691867104 - - PREDICTED: histidinol dehydrogenase, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_009976_020 0.0695836658 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105631286 [Jatropha curcas]
15 Hb_000035_170 0.0702801281 - - PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like [Jatropha curcas]
16 Hb_001518_080 0.0712308044 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646545 [Jatropha curcas]
17 Hb_006483_110 0.0728854512 - - PREDICTED: RNA-binding protein Musashi homolog 1 [Jatropha curcas]
18 Hb_015807_050 0.0731519291 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]
19 Hb_001348_080 0.073454001 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
20 Hb_000008_290 0.0735924278 - - PREDICTED: protein SAND [Jatropha curcas]

Gene co-expression network

sample Hb_001655_030 Hb_001655_030 Hb_006501_090 Hb_006501_090 Hb_001655_030--Hb_006501_090 Hb_011231_020 Hb_011231_020 Hb_001655_030--Hb_011231_020 Hb_007426_110 Hb_007426_110 Hb_001655_030--Hb_007426_110 Hb_001814_030 Hb_001814_030 Hb_001655_030--Hb_001814_030 Hb_003645_060 Hb_003645_060 Hb_001655_030--Hb_003645_060 Hb_000890_060 Hb_000890_060 Hb_001655_030--Hb_000890_060 Hb_000035_170 Hb_000035_170 Hb_006501_090--Hb_000035_170 Hb_109980_010 Hb_109980_010 Hb_006501_090--Hb_109980_010 Hb_001518_080 Hb_001518_080 Hb_006501_090--Hb_001518_080 Hb_001279_030 Hb_001279_030 Hb_006501_090--Hb_001279_030 Hb_000039_150 Hb_000039_150 Hb_006501_090--Hb_000039_150 Hb_009976_020 Hb_009976_020 Hb_011231_020--Hb_009976_020 Hb_011231_020--Hb_001814_030 Hb_002890_130 Hb_002890_130 Hb_011231_020--Hb_002890_130 Hb_003734_010 Hb_003734_010 Hb_011231_020--Hb_003734_010 Hb_008484_060 Hb_008484_060 Hb_011231_020--Hb_008484_060 Hb_006483_110 Hb_006483_110 Hb_007426_110--Hb_006483_110 Hb_028960_020 Hb_028960_020 Hb_007426_110--Hb_028960_020 Hb_008387_020 Hb_008387_020 Hb_007426_110--Hb_008387_020 Hb_002218_090 Hb_002218_090 Hb_007426_110--Hb_002218_090 Hb_002263_020 Hb_002263_020 Hb_007426_110--Hb_002263_020 Hb_004586_220 Hb_004586_220 Hb_001814_030--Hb_004586_220 Hb_002205_250 Hb_002205_250 Hb_001814_030--Hb_002205_250 Hb_000614_210 Hb_000614_210 Hb_001814_030--Hb_000614_210 Hb_012395_140 Hb_012395_140 Hb_001814_030--Hb_012395_140 Hb_159558_010 Hb_159558_010 Hb_001814_030--Hb_159558_010 Hb_020378_030 Hb_020378_030 Hb_001814_030--Hb_020378_030 Hb_000563_130 Hb_000563_130 Hb_003645_060--Hb_000563_130 Hb_004267_040 Hb_004267_040 Hb_003645_060--Hb_004267_040 Hb_000603_030 Hb_000603_030 Hb_003645_060--Hb_000603_030 Hb_010174_040 Hb_010174_040 Hb_003645_060--Hb_010174_040 Hb_003645_060--Hb_000035_170 Hb_000590_050 Hb_000590_050 Hb_000890_060--Hb_000590_050 Hb_000008_290 Hb_000008_290 Hb_000890_060--Hb_000008_290 Hb_000327_270 Hb_000327_270 Hb_000890_060--Hb_000327_270 Hb_000890_060--Hb_001814_030 Hb_000890_060--Hb_007426_110 Hb_000890_060--Hb_020378_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.8543 5.7443 6.76602 7.04831 6.71172 8.57017
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.6744 4.05033 6.35047 8.37083 7.85157

CAGE analysis