Hb_000035_170

Information

Type -
Description -
Location Contig35: 242297-248892
Sequence    

Annotation

kegg
ID rcu:RCOM_0920920
description DNA-directed RNA polymerase subunit, putative
nr
ID XP_012076429.1
description PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like [Jatropha curcas]
swissprot
ID Q9LK40
description DNA-directed RNA polymerases IV and V subunit 2 OS=Arabidopsis thaliana GN=NRPD2 PE=1 SV=1
trembl
ID A0A067KMJ5
description DNA-directed RNA polymerase OS=Jatropha curcas GN=JCGZ_07086 PE=3 SV=1
Gene Ontology
ID GO:0003677
description dna-directed rna polymerases iv and v subunit 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36408: 242368-248797
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000035_170 0.0 - - PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like [Jatropha curcas]
2 Hb_006501_090 0.0532357333 - - PREDICTED: golgin candidate 1 [Jatropha curcas]
3 Hb_012053_080 0.0570057127 - - AP-2 complex subunit alpha, putative [Ricinus communis]
4 Hb_000082_070 0.0627768302 - - PREDICTED: phosphatidylinositol 4-kinase alpha 1 [Jatropha curcas]
5 Hb_003645_060 0.0658903422 - - PREDICTED: monodehydroascorbate reductase, chloroplastic [Jatropha curcas]
6 Hb_000563_130 0.0694643581 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
7 Hb_001655_030 0.0702801281 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 3 isoform X2 [Jatropha curcas]
8 Hb_000086_440 0.0707624739 - - PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Jatropha curcas]
9 Hb_001318_070 0.0713213199 transcription factor TF Family: SBP conserved hypothetical protein [Ricinus communis]
10 Hb_020378_030 0.0729262284 - - PREDICTED: protein transport protein SEC31 homolog B [Jatropha curcas]
11 Hb_001001_150 0.0755112772 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002732_040 0.0763278519 - - PREDICTED: uncharacterized protein LOC105628163 isoform X1 [Jatropha curcas]
13 Hb_004920_090 0.077647386 - - PREDICTED: probable glutamyl endopeptidase, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_008024_030 0.0778656341 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105648348 [Jatropha curcas]
15 Hb_003436_020 0.0785579664 transcription factor TF Family: Orphans PREDICTED: uncharacterized protein LOC105636276 isoform X2 [Jatropha curcas]
16 Hb_000243_210 0.0786299385 - - protein with unknown function [Ricinus communis]
17 Hb_004586_220 0.079602914 - - PREDICTED: WD and tetratricopeptide repeats protein 1 isoform X3 [Jatropha curcas]
18 Hb_007426_110 0.0796325108 - - PREDICTED: vacuolar fusion protein CCZ1 homolog isoform X2 [Jatropha curcas]
19 Hb_001814_030 0.079794551 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
20 Hb_000462_060 0.080291637 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000035_170 Hb_000035_170 Hb_006501_090 Hb_006501_090 Hb_000035_170--Hb_006501_090 Hb_012053_080 Hb_012053_080 Hb_000035_170--Hb_012053_080 Hb_000082_070 Hb_000082_070 Hb_000035_170--Hb_000082_070 Hb_003645_060 Hb_003645_060 Hb_000035_170--Hb_003645_060 Hb_000563_130 Hb_000563_130 Hb_000035_170--Hb_000563_130 Hb_001655_030 Hb_001655_030 Hb_000035_170--Hb_001655_030 Hb_006501_090--Hb_001655_030 Hb_109980_010 Hb_109980_010 Hb_006501_090--Hb_109980_010 Hb_001518_080 Hb_001518_080 Hb_006501_090--Hb_001518_080 Hb_001279_030 Hb_001279_030 Hb_006501_090--Hb_001279_030 Hb_000039_150 Hb_000039_150 Hb_006501_090--Hb_000039_150 Hb_001935_110 Hb_001935_110 Hb_012053_080--Hb_001935_110 Hb_160459_040 Hb_160459_040 Hb_012053_080--Hb_160459_040 Hb_027380_140 Hb_027380_140 Hb_012053_080--Hb_027380_140 Hb_009296_010 Hb_009296_010 Hb_012053_080--Hb_009296_010 Hb_025477_040 Hb_025477_040 Hb_012053_080--Hb_025477_040 Hb_002631_140 Hb_002631_140 Hb_000082_070--Hb_002631_140 Hb_000082_070--Hb_160459_040 Hb_162275_040 Hb_162275_040 Hb_000082_070--Hb_162275_040 Hb_000086_440 Hb_000086_440 Hb_000082_070--Hb_000086_440 Hb_009771_110 Hb_009771_110 Hb_000082_070--Hb_009771_110 Hb_003645_060--Hb_000563_130 Hb_004267_040 Hb_004267_040 Hb_003645_060--Hb_004267_040 Hb_003645_060--Hb_001655_030 Hb_000603_030 Hb_000603_030 Hb_003645_060--Hb_000603_030 Hb_010174_040 Hb_010174_040 Hb_003645_060--Hb_010174_040 Hb_000563_130--Hb_004267_040 Hb_000563_130--Hb_000603_030 Hb_000398_080 Hb_000398_080 Hb_000563_130--Hb_000398_080 Hb_000011_100 Hb_000011_100 Hb_000563_130--Hb_000011_100 Hb_000836_410 Hb_000836_410 Hb_000563_130--Hb_000836_410 Hb_011231_020 Hb_011231_020 Hb_001655_030--Hb_011231_020 Hb_007426_110 Hb_007426_110 Hb_001655_030--Hb_007426_110 Hb_001814_030 Hb_001814_030 Hb_001655_030--Hb_001814_030 Hb_000890_060 Hb_000890_060 Hb_001655_030--Hb_000890_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.3308 14.2484 16.241 14.1127 18.978 17.6625
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.7139 6.07168 12.2963 16.0329 18.9031

CAGE analysis