Hb_009296_010

Information

Type -
Description -
Location Contig9296: 3810-19537
Sequence    

Annotation

kegg
ID pop:POPTR_0019s09060g
description hypothetical protein
nr
ID XP_012072559.1
description PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X3 [Jatropha curcas]
swissprot
ID P15170
description Eukaryotic peptide chain release factor GTP-binding subunit ERF3A OS=Homo sapiens GN=GSPT1 PE=1 SV=1
trembl
ID A0A067KNV5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05350 PE=4 SV=1
Gene Ontology
ID GO:0003743
description translation elongation factor ef1a initiation factor if2gamma family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62794: 3961-19621 , PASA_asmbl_62795: 3935-4645
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009296_010 0.0 - - PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X3 [Jatropha curcas]
2 Hb_000470_070 0.0514476126 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP43-like [Jatropha curcas]
3 Hb_002078_100 0.0529674484 - - PREDICTED: mannosyl-oligosaccharide glucosidase GCS1-like [Jatropha curcas]
4 Hb_019654_040 0.0565215601 - - PREDICTED: putative tRNA pseudouridine synthase Pus10 isoform X2 [Jatropha curcas]
5 Hb_027380_140 0.0669169875 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
6 Hb_012053_080 0.0672389273 - - AP-2 complex subunit alpha, putative [Ricinus communis]
7 Hb_001935_110 0.0689545384 - - PREDICTED: T-complex protein 1 subunit alpha [Jatropha curcas]
8 Hb_028308_010 0.0694767616 - - PREDICTED: probable protein S-acyltransferase 4 isoform X1 [Jatropha curcas]
9 Hb_007062_020 0.069872246 - - gcn4-complementing protein, putative [Ricinus communis]
10 Hb_000777_050 0.0713084503 - - hypothetical protein CICLE_v10008422mg [Citrus clementina]
11 Hb_003549_090 0.0716688799 - - PREDICTED: rhodanese-like domain-containing protein 6 [Jatropha curcas]
12 Hb_000785_040 0.0734544659 - - PREDICTED: uncharacterized protein LOC105628919 [Jatropha curcas]
13 Hb_001504_040 0.0752464308 - - PREDICTED: factor of DNA methylation 1-like [Jatropha curcas]
14 Hb_000648_100 0.0782943289 - - PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]
15 Hb_160459_040 0.0784554967 - - hypothetical protein JCGZ_01511 [Jatropha curcas]
16 Hb_000007_280 0.0797175777 - - hypothetical protein VITISV_000066 [Vitis vinifera]
17 Hb_000035_410 0.0803738317 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
18 Hb_174821_010 0.0819913907 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 14 [Jatropha curcas]
19 Hb_000152_260 0.0820999917 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 1 [Jatropha curcas]
20 Hb_012215_010 0.0825999071 - - PREDICTED: YTH domain-containing family protein 1 [Populus euphratica]

Gene co-expression network

sample Hb_009296_010 Hb_009296_010 Hb_000470_070 Hb_000470_070 Hb_009296_010--Hb_000470_070 Hb_002078_100 Hb_002078_100 Hb_009296_010--Hb_002078_100 Hb_019654_040 Hb_019654_040 Hb_009296_010--Hb_019654_040 Hb_027380_140 Hb_027380_140 Hb_009296_010--Hb_027380_140 Hb_012053_080 Hb_012053_080 Hb_009296_010--Hb_012053_080 Hb_001935_110 Hb_001935_110 Hb_009296_010--Hb_001935_110 Hb_000470_070--Hb_002078_100 Hb_174821_010 Hb_174821_010 Hb_000470_070--Hb_174821_010 Hb_000470_070--Hb_019654_040 Hb_000648_100 Hb_000648_100 Hb_000470_070--Hb_000648_100 Hb_001617_060 Hb_001617_060 Hb_000470_070--Hb_001617_060 Hb_002078_100--Hb_000648_100 Hb_002078_100--Hb_174821_010 Hb_000109_100 Hb_000109_100 Hb_002078_100--Hb_000109_100 Hb_002078_100--Hb_019654_040 Hb_019654_040--Hb_001935_110 Hb_019654_040--Hb_000648_100 Hb_001488_200 Hb_001488_200 Hb_019654_040--Hb_001488_200 Hb_011930_080 Hb_011930_080 Hb_019654_040--Hb_011930_080 Hb_002329_040 Hb_002329_040 Hb_027380_140--Hb_002329_040 Hb_008024_030 Hb_008024_030 Hb_027380_140--Hb_008024_030 Hb_027380_140--Hb_012053_080 Hb_007062_020 Hb_007062_020 Hb_027380_140--Hb_007062_020 Hb_027380_140--Hb_000470_070 Hb_000574_440 Hb_000574_440 Hb_027380_140--Hb_000574_440 Hb_012053_080--Hb_001935_110 Hb_160459_040 Hb_160459_040 Hb_012053_080--Hb_160459_040 Hb_000035_170 Hb_000035_170 Hb_012053_080--Hb_000035_170 Hb_025477_040 Hb_025477_040 Hb_012053_080--Hb_025477_040 Hb_001427_190 Hb_001427_190 Hb_001935_110--Hb_001427_190 Hb_000333_060 Hb_000333_060 Hb_001935_110--Hb_000333_060 Hb_001935_110--Hb_000470_070 Hb_001935_110--Hb_002078_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
44.6191 26.6699 34.5289 32.2332 46.4066 50.7174
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.8578 12.3159 23.2795 34.8097 28.3401

CAGE analysis