Hb_025477_040

Information

Type -
Description -
Location Contig25477: 43946-48812
Sequence    

Annotation

kegg
ID cit:102617917
description post-GPI attachment to proteins factor 3-like
nr
ID XP_012090327.1
description PREDICTED: post-GPI attachment to proteins factor 3 [Jatropha curcas]
swissprot
ID Q0VFE3
description Post-GPI attachment to proteins factor 3 OS=Xenopus tropicalis GN=pgap3 PE=2 SV=1
trembl
ID A0A067JEM0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26162 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26596: 44070-48685 , PASA_asmbl_26597: 45402-48685
cDNA
(Sanger)
(ID:Location)		 008_I06.ab1: 46046-48685 , 029_B07.ab1: 46404-48685

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025477_040 0.0 - - PREDICTED: post-GPI attachment to proteins factor 3 [Jatropha curcas]
2 Hb_032202_200 0.0607566328 - - ubiquitin-protein ligase, putative [Ricinus communis]
3 Hb_123903_010 0.0664625701 transcription factor TF Family: IWS1 conserved hypothetical protein [Ricinus communis]
4 Hb_002815_030 0.0680545136 - - hypothetical protein CISIN_1g0095162mg, partial [Citrus sinensis]
5 Hb_012053_080 0.0695994522 - - AP-2 complex subunit alpha, putative [Ricinus communis]
6 Hb_002329_040 0.0704336099 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
7 Hb_021297_050 0.0734040857 - - PREDICTED: signal recognition particle receptor subunit alpha [Jatropha curcas]
8 Hb_143629_110 0.0741814285 - - glutamyl-tRNA synthetase, cytoplasmic, putative [Ricinus communis]
9 Hb_000390_320 0.075121788 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-1b-like [Jatropha curcas]
10 Hb_001343_040 0.0777612405 - - PREDICTED: uncharacterized protein LOC105638555 [Jatropha curcas]
11 Hb_000740_100 0.07820664 - - calpain, putative [Ricinus communis]
12 Hb_000395_070 0.078541167 - - PREDICTED: serine/threonine-protein kinase BLUS1 isoform X2 [Jatropha curcas]
13 Hb_003645_060 0.0790184125 - - PREDICTED: monodehydroascorbate reductase, chloroplastic [Jatropha curcas]
14 Hb_001935_110 0.0792137251 - - PREDICTED: T-complex protein 1 subunit alpha [Jatropha curcas]
15 Hb_000920_210 0.0794574202 - - PREDICTED: uridine 5'-monophosphate synthase [Jatropha curcas]
16 Hb_010174_040 0.0795471665 - - PREDICTED: T-complex protein 1 subunit epsilon [Jatropha curcas]
17 Hb_012395_140 0.0797653839 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
18 Hb_009175_020 0.0798255581 - - PREDICTED: uncharacterized protein LOC101303140 [Fragaria vesca subsp. vesca]
19 Hb_002631_170 0.0804441374 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 36 [Jatropha curcas]
20 Hb_001369_130 0.0804712544 - - PREDICTED: autophagy-related protein 3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_025477_040 Hb_025477_040 Hb_032202_200 Hb_032202_200 Hb_025477_040--Hb_032202_200 Hb_123903_010 Hb_123903_010 Hb_025477_040--Hb_123903_010 Hb_002815_030 Hb_002815_030 Hb_025477_040--Hb_002815_030 Hb_012053_080 Hb_012053_080 Hb_025477_040--Hb_012053_080 Hb_002329_040 Hb_002329_040 Hb_025477_040--Hb_002329_040 Hb_021297_050 Hb_021297_050 Hb_025477_040--Hb_021297_050 Hb_143629_110 Hb_143629_110 Hb_032202_200--Hb_143629_110 Hb_032202_200--Hb_123903_010 Hb_003163_020 Hb_003163_020 Hb_032202_200--Hb_003163_020 Hb_011930_160 Hb_011930_160 Hb_032202_200--Hb_011930_160 Hb_010174_040 Hb_010174_040 Hb_032202_200--Hb_010174_040 Hb_123903_010--Hb_143629_110 Hb_009175_020 Hb_009175_020 Hb_123903_010--Hb_009175_020 Hb_123903_010--Hb_002815_030 Hb_000975_040 Hb_000975_040 Hb_123903_010--Hb_000975_040 Hb_000390_320 Hb_000390_320 Hb_123903_010--Hb_000390_320 Hb_001343_040 Hb_001343_040 Hb_002815_030--Hb_001343_040 Hb_000008_290 Hb_000008_290 Hb_002815_030--Hb_000008_290 Hb_000579_230 Hb_000579_230 Hb_002815_030--Hb_000579_230 Hb_012395_140 Hb_012395_140 Hb_002815_030--Hb_012395_140 Hb_000395_070 Hb_000395_070 Hb_002815_030--Hb_000395_070 Hb_000592_030 Hb_000592_030 Hb_002815_030--Hb_000592_030 Hb_001935_110 Hb_001935_110 Hb_012053_080--Hb_001935_110 Hb_160459_040 Hb_160459_040 Hb_012053_080--Hb_160459_040 Hb_000035_170 Hb_000035_170 Hb_012053_080--Hb_000035_170 Hb_027380_140 Hb_027380_140 Hb_012053_080--Hb_027380_140 Hb_009296_010 Hb_009296_010 Hb_012053_080--Hb_009296_010 Hb_002107_070 Hb_002107_070 Hb_002329_040--Hb_002107_070 Hb_002329_040--Hb_027380_140 Hb_000740_100 Hb_000740_100 Hb_002329_040--Hb_000740_100 Hb_002329_040--Hb_012395_140 Hb_001195_320 Hb_001195_320 Hb_002329_040--Hb_001195_320 Hb_000183_020 Hb_000183_020 Hb_002329_040--Hb_000183_020 Hb_000116_500 Hb_000116_500 Hb_021297_050--Hb_000116_500 Hb_021297_050--Hb_001195_320 Hb_001860_040 Hb_001860_040 Hb_021297_050--Hb_001860_040 Hb_000667_030 Hb_000667_030 Hb_021297_050--Hb_000667_030 Hb_000213_010 Hb_000213_010 Hb_021297_050--Hb_000213_010 Hb_000029_300 Hb_000029_300 Hb_021297_050--Hb_000029_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.5739 20.2462 17.0781 24.5598 37.958 29.1559
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.4961 10.3638 18.1884 33.0707 21.2185

CAGE analysis