Hb_010174_040

Information

Type -
Description -
Location Contig10174: 52302-57682
Sequence    

Annotation

kegg
ID vvi:100264594
description T-complex protein 1 subunit epsilon
nr
ID XP_012085554.1
description PREDICTED: T-complex protein 1 subunit epsilon [Jatropha curcas]
swissprot
ID O04450
description T-complex protein 1 subunit epsilon OS=Arabidopsis thaliana GN=CCT5 PE=1 SV=1
trembl
ID A0A067JS12
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17874 PE=3 SV=1
Gene Ontology
ID GO:0005829
description t-complex protein 1 subunit epsilon

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00835: 52380-57631
cDNA
(Sanger)
(ID:Location)		 036_C12.ab1: 52380-54532

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010174_040 0.0 - - PREDICTED: T-complex protein 1 subunit epsilon [Jatropha curcas]
2 Hb_003645_060 0.0627837018 - - PREDICTED: monodehydroascorbate reductase, chloroplastic [Jatropha curcas]
3 Hb_000592_030 0.0652439715 - - PREDICTED: uncharacterized protein LOC100853969 isoform X1 [Vitis vinifera]
4 Hb_000617_180 0.0671935192 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
5 Hb_002909_140 0.0672242472 - - PREDICTED: D-xylose-proton symporter-like 2 [Jatropha curcas]
6 Hb_001655_030 0.0685670406 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 3 isoform X2 [Jatropha curcas]
7 Hb_143629_110 0.0756262533 - - glutamyl-tRNA synthetase, cytoplasmic, putative [Ricinus communis]
8 Hb_032202_200 0.0765560738 - - ubiquitin-protein ligase, putative [Ricinus communis]
9 Hb_001473_180 0.0779505665 - - glutathione reductase [Hevea brasiliensis]
10 Hb_001221_080 0.0779571408 - - PREDICTED: conserved oligomeric Golgi complex subunit 2 isoform X2 [Jatropha curcas]
11 Hb_007803_050 0.0781032372 - - PREDICTED: uncharacterized protein LOC105129170 isoform X2 [Populus euphratica]
12 Hb_025477_040 0.0795471665 - - PREDICTED: post-GPI attachment to proteins factor 3 [Jatropha curcas]
13 Hb_000139_370 0.0806781426 - - ubiquitin-activating enzyme E1c, putative [Ricinus communis]
14 Hb_000008_290 0.0820631605 - - PREDICTED: protein SAND [Jatropha curcas]
15 Hb_000110_190 0.0836738497 - - hypothetical protein B456_013G081300 [Gossypium raimondii]
16 Hb_012053_080 0.0837002972 - - AP-2 complex subunit alpha, putative [Ricinus communis]
17 Hb_002044_150 0.0843198135 - - PREDICTED: A/G-specific adenine DNA glycosylase isoform X1 [Jatropha curcas]
18 Hb_006660_010 0.0844454394 - - PREDICTED: exocyst complex component EXO84C isoform X1 [Jatropha curcas]
19 Hb_168978_030 0.0851981433 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 8 [Jatropha curcas]
20 Hb_002815_030 0.0857392899 - - hypothetical protein CISIN_1g0095162mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_010174_040 Hb_010174_040 Hb_003645_060 Hb_003645_060 Hb_010174_040--Hb_003645_060 Hb_000592_030 Hb_000592_030 Hb_010174_040--Hb_000592_030 Hb_000617_180 Hb_000617_180 Hb_010174_040--Hb_000617_180 Hb_002909_140 Hb_002909_140 Hb_010174_040--Hb_002909_140 Hb_001655_030 Hb_001655_030 Hb_010174_040--Hb_001655_030 Hb_143629_110 Hb_143629_110 Hb_010174_040--Hb_143629_110 Hb_000563_130 Hb_000563_130 Hb_003645_060--Hb_000563_130 Hb_004267_040 Hb_004267_040 Hb_003645_060--Hb_004267_040 Hb_003645_060--Hb_001655_030 Hb_000603_030 Hb_000603_030 Hb_003645_060--Hb_000603_030 Hb_000035_170 Hb_000035_170 Hb_003645_060--Hb_000035_170 Hb_000613_050 Hb_000613_050 Hb_000592_030--Hb_000613_050 Hb_020378_030 Hb_020378_030 Hb_000592_030--Hb_020378_030 Hb_002815_030 Hb_002815_030 Hb_000592_030--Hb_002815_030 Hb_000537_050 Hb_000537_050 Hb_000592_030--Hb_000537_050 Hb_001343_040 Hb_001343_040 Hb_000592_030--Hb_001343_040 Hb_001473_180 Hb_001473_180 Hb_000592_030--Hb_001473_180 Hb_000462_060 Hb_000462_060 Hb_000617_180--Hb_000462_060 Hb_000347_070 Hb_000347_070 Hb_000617_180--Hb_000347_070 Hb_002375_010 Hb_002375_010 Hb_000617_180--Hb_002375_010 Hb_004619_030 Hb_004619_030 Hb_000617_180--Hb_004619_030 Hb_168978_030 Hb_168978_030 Hb_000617_180--Hb_168978_030 Hb_000008_290 Hb_000008_290 Hb_000617_180--Hb_000008_290 Hb_007803_050 Hb_007803_050 Hb_002909_140--Hb_007803_050 Hb_000212_380 Hb_000212_380 Hb_002909_140--Hb_000212_380 Hb_012498_010 Hb_012498_010 Hb_002909_140--Hb_012498_010 Hb_001221_080 Hb_001221_080 Hb_002909_140--Hb_001221_080 Hb_002169_050 Hb_002169_050 Hb_002909_140--Hb_002169_050 Hb_006501_090 Hb_006501_090 Hb_001655_030--Hb_006501_090 Hb_011231_020 Hb_011231_020 Hb_001655_030--Hb_011231_020 Hb_007426_110 Hb_007426_110 Hb_001655_030--Hb_007426_110 Hb_001814_030 Hb_001814_030 Hb_001655_030--Hb_001814_030 Hb_000890_060 Hb_000890_060 Hb_001655_030--Hb_000890_060 Hb_032202_200 Hb_032202_200 Hb_143629_110--Hb_032202_200 Hb_123903_010 Hb_123903_010 Hb_143629_110--Hb_123903_010 Hb_000390_320 Hb_000390_320 Hb_143629_110--Hb_000390_320 Hb_001617_060 Hb_001617_060 Hb_143629_110--Hb_001617_060 Hb_025477_040 Hb_025477_040 Hb_143629_110--Hb_025477_040 Hb_143629_110--Hb_000617_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.344 17.5858 26.3076 27.859 34.1195 36.9524
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.1558 14.7189 28.885 41.9916 26.8514

CAGE analysis