Hb_002375_010

Information

Type -
Description -
Location Contig2375: 12473-36428
Sequence    

Annotation

kegg
ID cic:CICLE_v10019435mg
description hypothetical protein
nr
ID XP_012065045.1
description PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X1 [Jatropha curcas]
swissprot
ID Q9ZVT9
description C2 and GRAM domain-containing protein At1g03370 OS=Arabidopsis thaliana GN=At1g03370 PE=2 SV=4
trembl
ID A0A067L732
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05708 PE=4 SV=1
Gene Ontology
ID GO:0009617
description c2 and gram domain-containing protein at1g03370 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24929: 12881-36198 , PASA_asmbl_24930: 12633-13052 , PASA_asmbl_24931: 34543-34731
cDNA
(Sanger)
(ID:Location)		 011_D03.ab1: 12633-13052 , 023_G14.ab1: 12633-13052

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002375_010 0.0 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X1 [Jatropha curcas]
2 Hb_000390_320 0.0472735646 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-1b-like [Jatropha curcas]
3 Hb_004195_200 0.0521242514 - - glycosyl transferase family 1 family protein [Populus trichocarpa]
4 Hb_000347_070 0.0555551501 - - conserved hypothetical protein [Ricinus communis]
5 Hb_007576_110 0.0573617744 - - Endoplasmic reticulum vesicle transporter protein [Theobroma cacao]
6 Hb_000617_180 0.0592116834 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
7 Hb_002784_020 0.0621014419 - - PREDICTED: probable protein arginine N-methyltransferase 3 [Jatropha curcas]
8 Hb_004235_080 0.0637523075 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
9 Hb_002835_230 0.0651961839 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
10 Hb_000975_040 0.0655859118 - - hypothetical protein CICLE_v10028249mg [Citrus clementina]
11 Hb_017862_020 0.0662381976 - - PREDICTED: probable inactive serine/threonine-protein kinase lvsG [Jatropha curcas]
12 Hb_000696_230 0.0669007003 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
13 Hb_000935_010 0.0671803905 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 16 [Jatropha curcas]
14 Hb_000462_060 0.067880111 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
15 Hb_004267_040 0.0689827745 - - PREDICTED: transcriptional adapter ADA2a [Jatropha curcas]
16 Hb_003163_020 0.0693035996 - - PREDICTED: polyadenylate-binding protein-interacting protein 12-like isoform X1 [Jatropha curcas]
17 Hb_002078_110 0.0696212145 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
18 Hb_002876_130 0.070389727 - - PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]
19 Hb_001488_200 0.0707681336 - - PREDICTED: ribosome biogenesis protein WDR12 homolog isoform X1 [Jatropha curcas]
20 Hb_004209_020 0.0716599239 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 51-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002375_010 Hb_002375_010 Hb_000390_320 Hb_000390_320 Hb_002375_010--Hb_000390_320 Hb_004195_200 Hb_004195_200 Hb_002375_010--Hb_004195_200 Hb_000347_070 Hb_000347_070 Hb_002375_010--Hb_000347_070 Hb_007576_110 Hb_007576_110 Hb_002375_010--Hb_007576_110 Hb_000617_180 Hb_000617_180 Hb_002375_010--Hb_000617_180 Hb_002784_020 Hb_002784_020 Hb_002375_010--Hb_002784_020 Hb_000680_090 Hb_000680_090 Hb_000390_320--Hb_000680_090 Hb_001195_320 Hb_001195_320 Hb_000390_320--Hb_001195_320 Hb_143629_110 Hb_143629_110 Hb_000390_320--Hb_143629_110 Hb_002329_040 Hb_002329_040 Hb_000390_320--Hb_002329_040 Hb_123903_010 Hb_123903_010 Hb_000390_320--Hb_123903_010 Hb_001104_160 Hb_001104_160 Hb_004195_200--Hb_001104_160 Hb_004195_200--Hb_007576_110 Hb_000366_120 Hb_000366_120 Hb_004195_200--Hb_000366_120 Hb_020831_030 Hb_020831_030 Hb_004195_200--Hb_020831_030 Hb_003640_040 Hb_003640_040 Hb_004195_200--Hb_003640_040 Hb_002025_020 Hb_002025_020 Hb_000347_070--Hb_002025_020 Hb_000731_270 Hb_000731_270 Hb_000347_070--Hb_000731_270 Hb_004619_030 Hb_004619_030 Hb_000347_070--Hb_004619_030 Hb_003163_020 Hb_003163_020 Hb_000347_070--Hb_003163_020 Hb_000190_120 Hb_000190_120 Hb_000347_070--Hb_000190_120 Hb_000789_310 Hb_000789_310 Hb_007576_110--Hb_000789_310 Hb_007576_110--Hb_000366_120 Hb_014361_070 Hb_014361_070 Hb_007576_110--Hb_014361_070 Hb_007576_110--Hb_000190_120 Hb_001409_020 Hb_001409_020 Hb_007576_110--Hb_001409_020 Hb_000462_060 Hb_000462_060 Hb_000617_180--Hb_000462_060 Hb_000617_180--Hb_000347_070 Hb_000617_180--Hb_004619_030 Hb_168978_030 Hb_168978_030 Hb_000617_180--Hb_168978_030 Hb_000008_290 Hb_000008_290 Hb_000617_180--Hb_000008_290 Hb_017862_020 Hb_017862_020 Hb_002784_020--Hb_017862_020 Hb_164544_010 Hb_164544_010 Hb_002784_020--Hb_164544_010 Hb_000696_230 Hb_000696_230 Hb_002784_020--Hb_000696_230 Hb_002784_020--Hb_000617_180 Hb_028872_090 Hb_028872_090 Hb_002784_020--Hb_028872_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.96564 6.62642 6.17591 5.12546 8.91847 7.66859
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.211 5.30156 6.0282 7.793 4.31008

CAGE analysis