Hb_003640_040

Information

Type -
Description -
Location Contig3640: 22013-25491
Sequence    

Annotation

kegg
ID pop:POPTR_0019s07870g
description POPTRDRAFT_809582; hypothetical protein
nr
ID XP_012088781.1
description PREDICTED: uncharacterized protein LOC105647348 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9IQ02
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s07870g PE=4 SV=2
Gene Ontology
ID GO:0007165
description PREDICTED: uncharacterized protein LOC105647348

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37472: 22206-25575 , PASA_asmbl_37473: 22040-25099 , PASA_asmbl_37474: 23692-23882
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003640_040 0.0 - - PREDICTED: uncharacterized protein LOC105647348 [Jatropha curcas]
2 Hb_020831_030 0.0451840526 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002056_090 0.0498253537 transcription factor TF Family: GNAT PREDICTED: probable acetyltransferase NATA1-like [Jatropha curcas]
4 Hb_001195_530 0.0504325446 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004195_200 0.0608623967 - - glycosyl transferase family 1 family protein [Populus trichocarpa]
6 Hb_000680_090 0.0643692873 - - Protein SEY1, putative [Ricinus communis]
7 Hb_000070_080 0.0670695775 - - PREDICTED: uncharacterized protein LOC105645742 isoform X2 [Jatropha curcas]
8 Hb_000080_150 0.069976736 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X2 [Jatropha curcas]
9 Hb_000479_220 0.0716364871 - - PREDICTED: uncharacterized protein LOC105644125 [Jatropha curcas]
10 Hb_002078_110 0.0722620443 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
11 Hb_013399_100 0.0733230266 - - conserved hypothetical protein [Ricinus communis]
12 Hb_006615_120 0.0765143953 - - PREDICTED: uncharacterized protein LOC105640682 [Jatropha curcas]
13 Hb_000923_010 0.080760519 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X1 [Jatropha curcas]
14 Hb_000366_120 0.0810406056 - - PREDICTED: chaperone protein dnaJ 49-like [Jatropha curcas]
15 Hb_000009_500 0.0820544761 - - PREDICTED: NASP-related protein sim3 [Jatropha curcas]
16 Hb_105105_010 0.0823460654 - - PREDICTED: coiled-coil domain-containing protein 132 [Jatropha curcas]
17 Hb_008511_090 0.082382308 - - PREDICTED: BTB/POZ domain-containing protein At3g05675-like [Jatropha curcas]
18 Hb_000029_300 0.0828120654 - - hypothetical protein JCGZ_10048 [Jatropha curcas]
19 Hb_009083_070 0.0832251487 - - PREDICTED: uncharacterized protein LOC105639870 [Jatropha curcas]
20 Hb_014361_070 0.0838713054 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]

Gene co-expression network

sample Hb_003640_040 Hb_003640_040 Hb_020831_030 Hb_020831_030 Hb_003640_040--Hb_020831_030 Hb_002056_090 Hb_002056_090 Hb_003640_040--Hb_002056_090 Hb_001195_530 Hb_001195_530 Hb_003640_040--Hb_001195_530 Hb_004195_200 Hb_004195_200 Hb_003640_040--Hb_004195_200 Hb_000680_090 Hb_000680_090 Hb_003640_040--Hb_000680_090 Hb_000070_080 Hb_000070_080 Hb_003640_040--Hb_000070_080 Hb_020831_030--Hb_001195_530 Hb_020831_030--Hb_002056_090 Hb_000049_260 Hb_000049_260 Hb_020831_030--Hb_000049_260 Hb_020831_030--Hb_004195_200 Hb_013399_100 Hb_013399_100 Hb_020831_030--Hb_013399_100 Hb_002056_090--Hb_001195_530 Hb_105105_010 Hb_105105_010 Hb_002056_090--Hb_105105_010 Hb_000087_060 Hb_000087_060 Hb_002056_090--Hb_000087_060 Hb_005137_040 Hb_005137_040 Hb_002056_090--Hb_005137_040 Hb_001195_530--Hb_105105_010 Hb_001408_140 Hb_001408_140 Hb_001195_530--Hb_001408_140 Hb_002205_250 Hb_002205_250 Hb_001195_530--Hb_002205_250 Hb_002375_010 Hb_002375_010 Hb_004195_200--Hb_002375_010 Hb_001104_160 Hb_001104_160 Hb_004195_200--Hb_001104_160 Hb_007576_110 Hb_007576_110 Hb_004195_200--Hb_007576_110 Hb_000366_120 Hb_000366_120 Hb_004195_200--Hb_000366_120 Hb_000390_320 Hb_000390_320 Hb_000680_090--Hb_000390_320 Hb_000878_180 Hb_000878_180 Hb_000680_090--Hb_000878_180 Hb_000084_250 Hb_000084_250 Hb_000680_090--Hb_000084_250 Hb_000162_280 Hb_000162_280 Hb_000680_090--Hb_000162_280 Hb_002615_090 Hb_002615_090 Hb_000680_090--Hb_002615_090 Hb_008511_090 Hb_008511_090 Hb_000070_080--Hb_008511_090 Hb_008103_060 Hb_008103_060 Hb_000070_080--Hb_008103_060 Hb_000479_220 Hb_000479_220 Hb_000070_080--Hb_000479_220 Hb_000070_080--Hb_000162_280 Hb_002078_110 Hb_002078_110 Hb_000070_080--Hb_002078_110 Hb_002078_220 Hb_002078_220 Hb_000070_080--Hb_002078_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.4816 60.2273 41.8881 49.2914 51.4672 53.9745
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.3707 33.6011 51.8747 36.2705 26.3323

CAGE analysis