Hb_000162_280

Information

Type -
Description -
Location Contig162: 388982-394387
Sequence    

Annotation

kegg
ID pop:POPTR_0009s13550g
description POPTRDRAFT_649242; choline transporter-related family protein
nr
ID XP_011046415.1
description PREDICTED: CTL-like protein DDB_G0288717 [Populus euphratica]
swissprot
ID Q54IJ2
description CTL-like protein DDB_G0288717 OS=Dictyostelium discoideum GN=DDB_G0288717 PE=3 SV=1
trembl
ID B9HR78
description Choline transporter-related family protein OS=Populus trichocarpa GN=POPTR_0009s13550g PE=4 SV=1
Gene Ontology
ID GO:0005634
description ctl-like protein ddb_g0288717

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14597: 389406-394405 , PASA_asmbl_14598: 392790-392865
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000162_280 0.0 - - PREDICTED: CTL-like protein DDB_G0288717 [Populus euphratica]
2 Hb_009112_010 0.0368357918 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
3 Hb_006615_120 0.0515305105 - - PREDICTED: uncharacterized protein LOC105640682 [Jatropha curcas]
4 Hb_000070_080 0.0597648467 - - PREDICTED: uncharacterized protein LOC105645742 isoform X2 [Jatropha curcas]
5 Hb_003633_070 0.0602896163 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
6 Hb_000116_060 0.0604506942 - - plant ubiquilin, putative [Ricinus communis]
7 Hb_000680_090 0.0626007694 - - Protein SEY1, putative [Ricinus communis]
8 Hb_000418_140 0.0656218458 - - PREDICTED: DNA damage-binding protein 1a [Jatropha curcas]
9 Hb_008112_030 0.0668889637 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004129_070 0.0669359113 - - PREDICTED: conserved oligomeric Golgi complex subunit 5 [Jatropha curcas]
11 Hb_001454_280 0.0672926273 - - PREDICTED: chaperone protein dnaJ 49 [Jatropha curcas]
12 Hb_000960_050 0.0690277031 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
13 Hb_002615_090 0.0692731266 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
14 Hb_001033_050 0.0696961759 - - PREDICTED: acetylornithine deacetylase [Jatropha curcas]
15 Hb_002276_240 0.0712900599 - - PREDICTED: uncharacterized protein LOC105640682 [Jatropha curcas]
16 Hb_002174_020 0.0717509803 - - ring finger protein, putative [Ricinus communis]
17 Hb_001147_110 0.0720288238 - - PREDICTED: dynamin-2A-like [Jatropha curcas]
18 Hb_002078_110 0.0725055684 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
19 Hb_000878_180 0.0726790895 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12 isoform X1 [Jatropha curcas]
20 Hb_002325_040 0.0744976127 - - PREDICTED: uncharacterized protein LOC105645422 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000162_280 Hb_000162_280 Hb_009112_010 Hb_009112_010 Hb_000162_280--Hb_009112_010 Hb_006615_120 Hb_006615_120 Hb_000162_280--Hb_006615_120 Hb_000070_080 Hb_000070_080 Hb_000162_280--Hb_000070_080 Hb_003633_070 Hb_003633_070 Hb_000162_280--Hb_003633_070 Hb_000116_060 Hb_000116_060 Hb_000162_280--Hb_000116_060 Hb_000680_090 Hb_000680_090 Hb_000162_280--Hb_000680_090 Hb_009112_010--Hb_003633_070 Hb_004629_010 Hb_004629_010 Hb_009112_010--Hb_004629_010 Hb_000960_050 Hb_000960_050 Hb_009112_010--Hb_000960_050 Hb_008112_030 Hb_008112_030 Hb_009112_010--Hb_008112_030 Hb_009112_010--Hb_006615_120 Hb_004129_070 Hb_004129_070 Hb_006615_120--Hb_004129_070 Hb_000174_060 Hb_000174_060 Hb_006615_120--Hb_000174_060 Hb_002276_240 Hb_002276_240 Hb_006615_120--Hb_002276_240 Hb_001033_050 Hb_001033_050 Hb_006615_120--Hb_001033_050 Hb_008511_090 Hb_008511_090 Hb_000070_080--Hb_008511_090 Hb_008103_060 Hb_008103_060 Hb_000070_080--Hb_008103_060 Hb_000479_220 Hb_000479_220 Hb_000070_080--Hb_000479_220 Hb_002078_110 Hb_002078_110 Hb_000070_080--Hb_002078_110 Hb_002078_220 Hb_002078_220 Hb_000070_080--Hb_002078_220 Hb_001799_050 Hb_001799_050 Hb_003633_070--Hb_001799_050 Hb_000418_140 Hb_000418_140 Hb_003633_070--Hb_000418_140 Hb_001143_250 Hb_001143_250 Hb_003633_070--Hb_001143_250 Hb_000640_310 Hb_000640_310 Hb_003633_070--Hb_000640_310 Hb_001243_060 Hb_001243_060 Hb_000116_060--Hb_001243_060 Hb_003680_230 Hb_003680_230 Hb_000116_060--Hb_003680_230 Hb_001377_070 Hb_001377_070 Hb_000116_060--Hb_001377_070 Hb_000116_060--Hb_009112_010 Hb_003040_020 Hb_003040_020 Hb_000116_060--Hb_003040_020 Hb_000390_320 Hb_000390_320 Hb_000680_090--Hb_000390_320 Hb_000878_180 Hb_000878_180 Hb_000680_090--Hb_000878_180 Hb_000084_250 Hb_000084_250 Hb_000680_090--Hb_000084_250 Hb_002615_090 Hb_002615_090 Hb_000680_090--Hb_002615_090 Hb_003640_040 Hb_003640_040 Hb_000680_090--Hb_003640_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.1057 29.7145 19.3137 19.0845 26.5728 27.4025
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.8064 10.8152 15.4517 18.1398 10.478

CAGE analysis