Hb_009112_010

Information

Type -
Description -
Location Contig9112: 15876-30125
Sequence    

Annotation

kegg
ID rcu:RCOM_1172830
description 26S proteasome regulatory subunit rpn1, putative
nr
ID XP_012088219.1
description PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
swissprot
ID Q9SIV2
description 26S proteasome non-ATPase regulatory subunit 2 homolog A OS=Arabidopsis thaliana GN=RPN1A PE=1 SV=2
trembl
ID A0A067JX19
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25741 PE=4 SV=1
Gene Ontology
ID GO:0000502
description 26s proteasome non-atpase regulatory subunit 2 homolog a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62139: 15943-30156
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009112_010 0.0 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
2 Hb_000162_280 0.0368357918 - - PREDICTED: CTL-like protein DDB_G0288717 [Populus euphratica]
3 Hb_003633_070 0.0549359492 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
4 Hb_004629_010 0.0551462667 - - PREDICTED: AP-3 complex subunit delta [Jatropha curcas]
5 Hb_000960_050 0.0605599622 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
6 Hb_008112_030 0.0607395423 - - conserved hypothetical protein [Ricinus communis]
7 Hb_006615_120 0.0622073742 - - PREDICTED: uncharacterized protein LOC105640682 [Jatropha curcas]
8 Hb_002174_020 0.063161989 - - ring finger protein, putative [Ricinus communis]
9 Hb_000418_140 0.0661180366 - - PREDICTED: DNA damage-binding protein 1a [Jatropha curcas]
10 Hb_002615_090 0.0674746017 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
11 Hb_004631_190 0.0684909499 - - PREDICTED: protein SCAI homolog [Jatropha curcas]
12 Hb_001454_280 0.0707202725 - - PREDICTED: chaperone protein dnaJ 49 [Jatropha curcas]
13 Hb_000116_060 0.0709277726 - - plant ubiquilin, putative [Ricinus communis]
14 Hb_004129_070 0.0718910225 - - PREDICTED: conserved oligomeric Golgi complex subunit 5 [Jatropha curcas]
15 Hb_000878_180 0.0727529111 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12 isoform X1 [Jatropha curcas]
16 Hb_000375_130 0.0729945325 - - Leucine-rich repeat transmembrane protein kinase family protein isoform 1 [Theobroma cacao]
17 Hb_007635_030 0.073363488 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Jatropha curcas]
18 Hb_000230_090 0.0734332159 - - PREDICTED: WD repeat-containing protein 48 isoform X1 [Jatropha curcas]
19 Hb_002276_240 0.0766902259 - - PREDICTED: uncharacterized protein LOC105640682 [Jatropha curcas]
20 Hb_000680_090 0.0776131991 - - Protein SEY1, putative [Ricinus communis]

Gene co-expression network

sample Hb_009112_010 Hb_009112_010 Hb_000162_280 Hb_000162_280 Hb_009112_010--Hb_000162_280 Hb_003633_070 Hb_003633_070 Hb_009112_010--Hb_003633_070 Hb_004629_010 Hb_004629_010 Hb_009112_010--Hb_004629_010 Hb_000960_050 Hb_000960_050 Hb_009112_010--Hb_000960_050 Hb_008112_030 Hb_008112_030 Hb_009112_010--Hb_008112_030 Hb_006615_120 Hb_006615_120 Hb_009112_010--Hb_006615_120 Hb_000162_280--Hb_006615_120 Hb_000070_080 Hb_000070_080 Hb_000162_280--Hb_000070_080 Hb_000162_280--Hb_003633_070 Hb_000116_060 Hb_000116_060 Hb_000162_280--Hb_000116_060 Hb_000680_090 Hb_000680_090 Hb_000162_280--Hb_000680_090 Hb_001799_050 Hb_001799_050 Hb_003633_070--Hb_001799_050 Hb_000418_140 Hb_000418_140 Hb_003633_070--Hb_000418_140 Hb_001143_250 Hb_001143_250 Hb_003633_070--Hb_001143_250 Hb_000640_310 Hb_000640_310 Hb_003633_070--Hb_000640_310 Hb_006787_060 Hb_006787_060 Hb_004629_010--Hb_006787_060 Hb_000120_660 Hb_000120_660 Hb_004629_010--Hb_000120_660 Hb_002392_030 Hb_002392_030 Hb_004629_010--Hb_002392_030 Hb_005104_010 Hb_005104_010 Hb_004629_010--Hb_005104_010 Hb_003929_140 Hb_003929_140 Hb_004629_010--Hb_003929_140 Hb_000230_090 Hb_000230_090 Hb_000960_050--Hb_000230_090 Hb_000960_050--Hb_008112_030 Hb_000406_230 Hb_000406_230 Hb_000960_050--Hb_000406_230 Hb_000914_120 Hb_000914_120 Hb_000960_050--Hb_000914_120 Hb_000174_060 Hb_000174_060 Hb_000960_050--Hb_000174_060 Hb_002174_020 Hb_002174_020 Hb_008112_030--Hb_002174_020 Hb_007635_030 Hb_007635_030 Hb_008112_030--Hb_007635_030 Hb_004453_110 Hb_004453_110 Hb_008112_030--Hb_004453_110 Hb_005731_090 Hb_005731_090 Hb_008112_030--Hb_005731_090 Hb_006252_020 Hb_006252_020 Hb_008112_030--Hb_006252_020 Hb_004129_070 Hb_004129_070 Hb_006615_120--Hb_004129_070 Hb_006615_120--Hb_000174_060 Hb_002276_240 Hb_002276_240 Hb_006615_120--Hb_002276_240 Hb_001033_050 Hb_001033_050 Hb_006615_120--Hb_001033_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.3079 42.3009 27.7457 26.0844 40.6051 41.4494
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.1364 14.7979 20.7119 25.0952 19.0127

CAGE analysis