Hb_005104_010

Information

Type -
Description -
Location Contig5104: 42382-56018
Sequence    

Annotation

kegg
ID pop:POPTR_0004s06730g
description POPTRDRAFT_647766; hypothetical protein
nr
ID XP_011046078.1
description PREDICTED: uncharacterized protein LOC105140796 isoform X1 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9H283
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s06730g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46328: 42304-43353 , PASA_asmbl_46329: 43428-43911 , PASA_asmbl_46330: 43970-55934 , PASA_asmbl_46332: 52061-52222
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005104_010 0.0 - - PREDICTED: uncharacterized protein LOC105140796 isoform X1 [Populus euphratica]
2 Hb_001021_200 0.0676774671 desease resistance Gene Name: AAA PREDICTED: peroxisome biogenesis protein 6 [Jatropha curcas]
3 Hb_004629_010 0.0707820118 - - PREDICTED: AP-3 complex subunit delta [Jatropha curcas]
4 Hb_000120_660 0.0710042197 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
5 Hb_000786_040 0.0734881552 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 17 [Jatropha curcas]
6 Hb_000345_150 0.0737663202 - - PREDICTED: uncharacterized protein LOC105647517 isoform X1 [Jatropha curcas]
7 Hb_003106_030 0.0743533577 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
8 Hb_002784_010 0.0760829324 - - DNA-directed RNA polymerase I subunit, putative [Ricinus communis]
9 Hb_157966_010 0.0764007485 - - hypothetical protein JCGZ_13877 [Jatropha curcas]
10 Hb_001231_030 0.0779067054 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Jatropha curcas]
11 Hb_002282_060 0.0784844557 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
12 Hb_002022_070 0.0794711439 - - PREDICTED: histidine--tRNA ligase [Jatropha curcas]
13 Hb_000230_090 0.081064492 - - PREDICTED: WD repeat-containing protein 48 isoform X1 [Jatropha curcas]
14 Hb_007813_030 0.0819639133 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At4g19050 [Jatropha curcas]
15 Hb_000661_200 0.0824119244 - - PREDICTED: uncharacterized protein LOC105648311 isoform X1 [Jatropha curcas]
16 Hb_000260_640 0.0824668146 - - PREDICTED: uncharacterized protein At1g51745 [Jatropha curcas]
17 Hb_000960_100 0.0845557957 - - PREDICTED: uncharacterized protein At1g51745 [Jatropha curcas]
18 Hb_000103_100 0.0851453867 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Jatropha curcas]
19 Hb_000544_060 0.085384918 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
20 Hb_000780_170 0.0856408369 - - PREDICTED: OBERON-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_005104_010 Hb_005104_010 Hb_001021_200 Hb_001021_200 Hb_005104_010--Hb_001021_200 Hb_004629_010 Hb_004629_010 Hb_005104_010--Hb_004629_010 Hb_000120_660 Hb_000120_660 Hb_005104_010--Hb_000120_660 Hb_000786_040 Hb_000786_040 Hb_005104_010--Hb_000786_040 Hb_000345_150 Hb_000345_150 Hb_005104_010--Hb_000345_150 Hb_003106_030 Hb_003106_030 Hb_005104_010--Hb_003106_030 Hb_000577_030 Hb_000577_030 Hb_001021_200--Hb_000577_030 Hb_000230_090 Hb_000230_090 Hb_001021_200--Hb_000230_090 Hb_002022_070 Hb_002022_070 Hb_001021_200--Hb_002022_070 Hb_000917_160 Hb_000917_160 Hb_001021_200--Hb_000917_160 Hb_000236_470 Hb_000236_470 Hb_001021_200--Hb_000236_470 Hb_009112_010 Hb_009112_010 Hb_004629_010--Hb_009112_010 Hb_006787_060 Hb_006787_060 Hb_004629_010--Hb_006787_060 Hb_004629_010--Hb_000120_660 Hb_002392_030 Hb_002392_030 Hb_004629_010--Hb_002392_030 Hb_003929_140 Hb_003929_140 Hb_004629_010--Hb_003929_140 Hb_003729_030 Hb_003729_030 Hb_000120_660--Hb_003729_030 Hb_157966_010 Hb_157966_010 Hb_000120_660--Hb_157966_010 Hb_000780_170 Hb_000780_170 Hb_000120_660--Hb_000780_170 Hb_008253_030 Hb_008253_030 Hb_000120_660--Hb_008253_030 Hb_002784_010 Hb_002784_010 Hb_000786_040--Hb_002784_010 Hb_000786_040--Hb_000230_090 Hb_000786_040--Hb_008253_030 Hb_001767_140 Hb_001767_140 Hb_000786_040--Hb_001767_140 Hb_000786_040--Hb_000345_150 Hb_000345_150--Hb_002022_070 Hb_000345_150--Hb_004629_010 Hb_005539_090 Hb_005539_090 Hb_000345_150--Hb_005539_090 Hb_034243_020 Hb_034243_020 Hb_000345_150--Hb_034243_020 Hb_002762_130 Hb_002762_130 Hb_003106_030--Hb_002762_130 Hb_003106_030--Hb_000345_150 Hb_000836_020 Hb_000836_020 Hb_003106_030--Hb_000836_020 Hb_010712_040 Hb_010712_040 Hb_003106_030--Hb_010712_040 Hb_003106_030--Hb_002784_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.72259 15.6497 6.89214 5.07674 9.76254 12.4421
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.00624 3.44711 4.57164 6.09597 6.96972

CAGE analysis