Hb_005539_090

Information

Type transcription factor
Description TF Family: PHD
Location Contig5539: 53197-67146
Sequence    

Annotation

kegg
ID rcu:RCOM_0527670
description DNA binding protein, putative
nr
ID XP_012085353.1
description PREDICTED: methyl-CpG-binding domain-containing protein 9 isoform X1 [Jatropha curcas]
swissprot
ID Q9SGH2
description Methyl-CpG-binding domain-containing protein 9 OS=Arabidopsis thaliana GN=MBD9 PE=2 SV=1
trembl
ID B9SH81
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_0527670 PE=4 SV=1
Gene Ontology
ID GO:0005634
description methyl- -binding domain-containing protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48368: 52710-54759 , PASA_asmbl_48370: 55541-55781 , PASA_asmbl_48372: 56353-58756 , PASA_asmbl_48373: 58815-63192 , PASA_asmbl_48374: 63259-63820 , PASA_asmbl_48375: 64468-64821 , PASA_asmbl_48377: 65648-67125 , PASA_asmbl_48378: 67989-70525
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005539_090 0.0 transcription factor TF Family: PHD PREDICTED: methyl-CpG-binding domain-containing protein 9 isoform X1 [Jatropha curcas]
2 Hb_000012_140 0.0701456132 - - conserved hypothetical protein [Ricinus communis]
3 Hb_007576_120 0.0722222815 - - NBS-LRR disease resistance protein NBS49 [Dimocarpus longan]
4 Hb_004483_040 0.0722986397 - - hypothetical protein JCGZ_22047 [Jatropha curcas]
5 Hb_000977_120 0.074450266 - - PREDICTED: sister chromatid cohesion 1 protein 4 isoform X2 [Jatropha curcas]
6 Hb_000321_150 0.0749598983 - - PREDICTED: uncharacterized protein LOC105645596 isoform X1 [Jatropha curcas]
7 Hb_000960_100 0.0763299175 - - PREDICTED: uncharacterized protein At1g51745 [Jatropha curcas]
8 Hb_000345_150 0.0770045806 - - PREDICTED: uncharacterized protein LOC105647517 isoform X1 [Jatropha curcas]
9 Hb_003994_100 0.0770460215 transcription factor TF Family: PHD PREDICTED: histone acetyltransferase HAC1 isoform X1 [Jatropha curcas]
10 Hb_004108_100 0.0783768395 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33B isoform X2 [Jatropha curcas]
11 Hb_000661_130 0.0807596952 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105648320 [Jatropha curcas]
12 Hb_019430_020 0.082843411 - - PREDICTED: uncharacterized protein LOC105641844 isoform X1 [Jatropha curcas]
13 Hb_000540_060 0.0837396011 - - PREDICTED: uncharacterized protein LOC105628177 [Jatropha curcas]
14 Hb_009767_080 0.0837887061 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
15 Hb_002174_030 0.0859836882 - - transcription elongation factor s-II, putative [Ricinus communis]
16 Hb_052764_060 0.086226161 - - XPA-binding protein, putative [Ricinus communis]
17 Hb_002022_070 0.0867058073 - - PREDICTED: histidine--tRNA ligase [Jatropha curcas]
18 Hb_000406_020 0.0873959777 - - -
19 Hb_006663_040 0.0892041027 - - PREDICTED: DDB1- and CUL4-associated factor homolog 1 isoform X2 [Jatropha curcas]
20 Hb_001967_030 0.08962469 - - PREDICTED: uncharacterized protein LOC105633557 [Jatropha curcas]

Gene co-expression network

sample Hb_005539_090 Hb_005539_090 Hb_000012_140 Hb_000012_140 Hb_005539_090--Hb_000012_140 Hb_007576_120 Hb_007576_120 Hb_005539_090--Hb_007576_120 Hb_004483_040 Hb_004483_040 Hb_005539_090--Hb_004483_040 Hb_000977_120 Hb_000977_120 Hb_005539_090--Hb_000977_120 Hb_000321_150 Hb_000321_150 Hb_005539_090--Hb_000321_150 Hb_000960_100 Hb_000960_100 Hb_005539_090--Hb_000960_100 Hb_000012_140--Hb_007576_120 Hb_001143_250 Hb_001143_250 Hb_000012_140--Hb_001143_250 Hb_002022_070 Hb_002022_070 Hb_000012_140--Hb_002022_070 Hb_034243_020 Hb_034243_020 Hb_000012_140--Hb_034243_020 Hb_004543_030 Hb_004543_030 Hb_000012_140--Hb_004543_030 Hb_007576_120--Hb_004543_030 Hb_007576_120--Hb_034243_020 Hb_001493_040 Hb_001493_040 Hb_007576_120--Hb_001493_040 Hb_000139_090 Hb_000139_090 Hb_007576_120--Hb_000139_090 Hb_000025_280 Hb_000025_280 Hb_004483_040--Hb_000025_280 Hb_000069_470 Hb_000069_470 Hb_004483_040--Hb_000069_470 Hb_011242_060 Hb_011242_060 Hb_004483_040--Hb_011242_060 Hb_002085_030 Hb_002085_030 Hb_004483_040--Hb_002085_030 Hb_000661_130 Hb_000661_130 Hb_004483_040--Hb_000661_130 Hb_002235_300 Hb_002235_300 Hb_000977_120--Hb_002235_300 Hb_002253_080 Hb_002253_080 Hb_000977_120--Hb_002253_080 Hb_003729_030 Hb_003729_030 Hb_000977_120--Hb_003729_030 Hb_000977_120--Hb_000321_150 Hb_002615_090 Hb_002615_090 Hb_000977_120--Hb_002615_090 Hb_000025_320 Hb_000025_320 Hb_000977_120--Hb_000025_320 Hb_000321_150--Hb_003729_030 Hb_006117_080 Hb_006117_080 Hb_000321_150--Hb_006117_080 Hb_000321_150--Hb_000069_470 Hb_000321_150--Hb_000661_130 Hb_009767_080 Hb_009767_080 Hb_000321_150--Hb_009767_080 Hb_000960_100--Hb_002615_090 Hb_004108_100 Hb_004108_100 Hb_000960_100--Hb_004108_100 Hb_000960_100--Hb_002022_070 Hb_000960_100--Hb_000025_320 Hb_000960_100--Hb_002235_300 Hb_001235_230 Hb_001235_230 Hb_000960_100--Hb_001235_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.72143 10.6706 2.81099 2.59863 5.81332 6.4183
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.04817 2.35062 4.66849 4.53401 6.96258

CAGE analysis