Hb_000661_130

Information

Type transcription factor
Description TF Family: DDT
Location Contig661: 121756-132038
Sequence    

Annotation

kegg
ID rcu:RCOM_1578820
description hypothetical protein
nr
ID XP_012090058.1
description PREDICTED: uncharacterized protein LOC105648320 [Jatropha curcas]
swissprot
ID Q12830
description Nucleosome-remodeling factor subunit BPTF OS=Homo sapiens GN=BPTF PE=1 SV=3
trembl
ID A0A067JH50
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25964 PE=4 SV=1
Gene Ontology
ID GO:0008270
description dna ion isoform 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52966: 123205-123397 , PASA_asmbl_52967: 123853-124397 , PASA_asmbl_52968: 124448-125829 , PASA_asmbl_52969: 128514-132029
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000661_130 0.0 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105648320 [Jatropha curcas]
2 Hb_019430_020 0.0637655632 - - PREDICTED: uncharacterized protein LOC105641844 isoform X1 [Jatropha curcas]
3 Hb_000321_150 0.0647030997 - - PREDICTED: uncharacterized protein LOC105645596 isoform X1 [Jatropha curcas]
4 Hb_006117_080 0.0712323471 - - PREDICTED: transcription factor GTE4 isoform X1 [Jatropha curcas]
5 Hb_000069_470 0.0714911368 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
6 Hb_010712_040 0.0715540174 - - PREDICTED: pentatricopeptide repeat-containing protein At1g11290 [Jatropha curcas]
7 Hb_004483_040 0.0719213668 - - hypothetical protein JCGZ_22047 [Jatropha curcas]
8 Hb_024185_010 0.0725996782 transcription factor TF Family: PHD PREDICTED: histone acetyltransferase HAC1 isoform X1 [Jatropha curcas]
9 Hb_000665_230 0.0728650344 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
10 Hb_002174_030 0.0786355935 - - transcription elongation factor s-II, putative [Ricinus communis]
11 Hb_011242_060 0.0797589952 transcription factor TF Family: SNF2 Chromo domain protein, putative [Ricinus communis]
12 Hb_001488_180 0.0797761255 - - PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]
13 Hb_009767_080 0.0800931893 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
14 Hb_005539_090 0.0807596952 transcription factor TF Family: PHD PREDICTED: methyl-CpG-binding domain-containing protein 9 isoform X1 [Jatropha curcas]
15 Hb_000703_130 0.0820937817 - - PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]
16 Hb_009150_020 0.082396385 - - PREDICTED: uncharacterized protein LOC105630583 [Jatropha curcas]
17 Hb_008053_040 0.0850537885 - - PREDICTED: mediator of RNA polymerase II transcription subunit 12-like [Pyrus x bretschneideri]
18 Hb_000265_090 0.0860032311 - - PREDICTED: flowering time control protein FPA [Jatropha curcas]
19 Hb_007575_080 0.086956999 - - PREDICTED: lysine-specific histone demethylase 1 homolog 3 [Jatropha curcas]
20 Hb_002095_070 0.0889600042 - - PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase [Jatropha curcas]

Gene co-expression network

sample Hb_000661_130 Hb_000661_130 Hb_019430_020 Hb_019430_020 Hb_000661_130--Hb_019430_020 Hb_000321_150 Hb_000321_150 Hb_000661_130--Hb_000321_150 Hb_006117_080 Hb_006117_080 Hb_000661_130--Hb_006117_080 Hb_000069_470 Hb_000069_470 Hb_000661_130--Hb_000069_470 Hb_010712_040 Hb_010712_040 Hb_000661_130--Hb_010712_040 Hb_004483_040 Hb_004483_040 Hb_000661_130--Hb_004483_040 Hb_009767_080 Hb_009767_080 Hb_019430_020--Hb_009767_080 Hb_001322_130 Hb_001322_130 Hb_019430_020--Hb_001322_130 Hb_000665_230 Hb_000665_230 Hb_019430_020--Hb_000665_230 Hb_019430_020--Hb_000321_150 Hb_002253_080 Hb_002253_080 Hb_019430_020--Hb_002253_080 Hb_003729_030 Hb_003729_030 Hb_000321_150--Hb_003729_030 Hb_000321_150--Hb_006117_080 Hb_000321_150--Hb_000069_470 Hb_000321_150--Hb_009767_080 Hb_000977_120 Hb_000977_120 Hb_000321_150--Hb_000977_120 Hb_001104_190 Hb_001104_190 Hb_006117_080--Hb_001104_190 Hb_006117_080--Hb_000069_470 Hb_009150_020 Hb_009150_020 Hb_006117_080--Hb_009150_020 Hb_024185_010 Hb_024185_010 Hb_006117_080--Hb_024185_010 Hb_000260_640 Hb_000260_640 Hb_006117_080--Hb_000260_640 Hb_011242_060 Hb_011242_060 Hb_000069_470--Hb_011242_060 Hb_031042_050 Hb_031042_050 Hb_000069_470--Hb_031042_050 Hb_000025_280 Hb_000025_280 Hb_000069_470--Hb_000025_280 Hb_000069_470--Hb_001104_190 Hb_000069_470--Hb_004483_040 Hb_000265_090 Hb_000265_090 Hb_010712_040--Hb_000265_090 Hb_010712_040--Hb_011242_060 Hb_010712_040--Hb_006117_080 Hb_000703_130 Hb_000703_130 Hb_010712_040--Hb_000703_130 Hb_000836_020 Hb_000836_020 Hb_010712_040--Hb_000836_020 Hb_004483_040--Hb_000025_280 Hb_004483_040--Hb_011242_060 Hb_002085_030 Hb_002085_030 Hb_004483_040--Hb_002085_030 Hb_005539_090 Hb_005539_090 Hb_004483_040--Hb_005539_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.98261 19.1366 6.82001 5.80489 7.18068 10.4633
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.79526 4.02527 7.88253 7.93062 13.1783

CAGE analysis