Hb_009767_080

Information

Type transcription factor
Description TF Family: PHD
Location Contig9767: 62036-89755
Sequence    

Annotation

kegg
ID rcu:RCOM_0912170
description hypothetical protein
nr
ID XP_012069623.1
description PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
swissprot
ID Q43072
description Imidazoleglycerol-phosphate dehydratase OS=Pisum sativum GN=HIS3 PE=2 SV=1
trembl
ID A0A067KVD6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02169 PE=4 SV=1
Gene Ontology
ID GO:0003824
description acyl- n-acyltransferase with ring fyve phd-type zinc finger

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64117: 62503-62613 , PASA_asmbl_64118: 62681-72003 , PASA_asmbl_64120: 72385-76686 , PASA_asmbl_64123: 83632-84203 , PASA_asmbl_64124: 78482-88915 , PASA_asmbl_64125: 87916-88324 , PASA_asmbl_64126: 83164-83476 , PASA_asmbl_64128: 87112-87471
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009767_080 0.0 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
2 Hb_019430_020 0.0604980206 - - PREDICTED: uncharacterized protein LOC105641844 isoform X1 [Jatropha curcas]
3 Hb_000890_050 0.0609133399 - - PREDICTED: uncharacterized protein LOC105631800 [Jatropha curcas]
4 Hb_000684_250 0.0630588875 - - PREDICTED: uncharacterized protein LOC105642172 [Jatropha curcas]
5 Hb_009898_010 0.0659686828 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105645502 [Jatropha curcas]
6 Hb_000321_150 0.0673288093 - - PREDICTED: uncharacterized protein LOC105645596 isoform X1 [Jatropha curcas]
7 Hb_000069_470 0.0682321321 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
8 Hb_001205_230 0.0688121615 - - PREDICTED: acidic leucine-rich nuclear phosphoprotein 32-related protein [Jatropha curcas]
9 Hb_000025_280 0.071756221 transcription factor TF Family: C3H hypothetical protein JCGZ_07432 [Jatropha curcas]
10 Hb_001268_380 0.0719548806 - - PREDICTED: pentatricopeptide repeat-containing protein At5g14080-like [Jatropha curcas]
11 Hb_004483_040 0.0725955086 - - hypothetical protein JCGZ_22047 [Jatropha curcas]
12 Hb_005656_040 0.0728777702 desease resistance Gene Name: T2SE ATP-dependent RNA helicase, putative [Ricinus communis]
13 Hb_000130_490 0.0731236664 - - PREDICTED: uncharacterized protein LOC105637408 isoform X2 [Jatropha curcas]
14 Hb_005486_030 0.0750210337 transcription factor TF Family: PHD hypothetical protein POPTR_0017s10890g [Populus trichocarpa]
15 Hb_000672_040 0.0756546121 - - PREDICTED: ENHANCER OF AG-4 protein 2 [Jatropha curcas]
16 Hb_000017_220 0.0756740381 - - PREDICTED: uncharacterized protein LOC105645768 [Jatropha curcas]
17 Hb_003729_030 0.0756857452 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 [Jatropha curcas]
18 Hb_000977_120 0.0756969523 - - PREDICTED: sister chromatid cohesion 1 protein 4 isoform X2 [Jatropha curcas]
19 Hb_000046_190 0.0757803299 - - PREDICTED: uncharacterized protein LOC105647118 [Jatropha curcas]
20 Hb_002780_010 0.0764093026 - - PREDICTED: uncharacterized protein LOC105639237 [Jatropha curcas]

Gene co-expression network

sample Hb_009767_080 Hb_009767_080 Hb_019430_020 Hb_019430_020 Hb_009767_080--Hb_019430_020 Hb_000890_050 Hb_000890_050 Hb_009767_080--Hb_000890_050 Hb_000684_250 Hb_000684_250 Hb_009767_080--Hb_000684_250 Hb_009898_010 Hb_009898_010 Hb_009767_080--Hb_009898_010 Hb_000321_150 Hb_000321_150 Hb_009767_080--Hb_000321_150 Hb_000069_470 Hb_000069_470 Hb_009767_080--Hb_000069_470 Hb_000661_130 Hb_000661_130 Hb_019430_020--Hb_000661_130 Hb_001322_130 Hb_001322_130 Hb_019430_020--Hb_001322_130 Hb_000665_230 Hb_000665_230 Hb_019430_020--Hb_000665_230 Hb_019430_020--Hb_000321_150 Hb_002253_080 Hb_002253_080 Hb_019430_020--Hb_002253_080 Hb_004143_130 Hb_004143_130 Hb_000890_050--Hb_004143_130 Hb_000270_670 Hb_000270_670 Hb_000890_050--Hb_000270_670 Hb_015807_070 Hb_015807_070 Hb_000890_050--Hb_015807_070 Hb_000318_390 Hb_000318_390 Hb_000890_050--Hb_000318_390 Hb_001967_030 Hb_001967_030 Hb_000890_050--Hb_001967_030 Hb_001329_140 Hb_001329_140 Hb_000684_250--Hb_001329_140 Hb_003168_110 Hb_003168_110 Hb_000684_250--Hb_003168_110 Hb_002235_300 Hb_002235_300 Hb_000684_250--Hb_002235_300 Hb_000684_250--Hb_002253_080 Hb_002267_140 Hb_002267_140 Hb_000684_250--Hb_002267_140 Hb_002780_010 Hb_002780_010 Hb_009898_010--Hb_002780_010 Hb_002311_100 Hb_002311_100 Hb_009898_010--Hb_002311_100 Hb_002316_160 Hb_002316_160 Hb_009898_010--Hb_002316_160 Hb_005486_030 Hb_005486_030 Hb_009898_010--Hb_005486_030 Hb_005656_040 Hb_005656_040 Hb_009898_010--Hb_005656_040 Hb_003729_030 Hb_003729_030 Hb_000321_150--Hb_003729_030 Hb_006117_080 Hb_006117_080 Hb_000321_150--Hb_006117_080 Hb_000321_150--Hb_000069_470 Hb_000321_150--Hb_000661_130 Hb_000977_120 Hb_000977_120 Hb_000321_150--Hb_000977_120 Hb_011242_060 Hb_011242_060 Hb_000069_470--Hb_011242_060 Hb_031042_050 Hb_031042_050 Hb_000069_470--Hb_031042_050 Hb_000069_470--Hb_006117_080 Hb_000025_280 Hb_000025_280 Hb_000069_470--Hb_000025_280 Hb_001104_190 Hb_001104_190 Hb_000069_470--Hb_001104_190 Hb_004483_040 Hb_004483_040 Hb_000069_470--Hb_004483_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.2768 36.8774 11.8429 16.1046 21.1109 23.5359
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.8838 12.9793 25.6469 21.2226 29.283

CAGE analysis