Hb_000684_250

Information

Type -
Description -
Location Contig684: 260051-263524
Sequence    

Annotation

kegg
ID pop:POPTR_0006s13390g
description PWWP domain-containing family protein
nr
ID XP_012082284.1
description PREDICTED: uncharacterized protein LOC105642172 [Jatropha curcas]
swissprot
ID Q5RKH0
description Putative oxidoreductase GLYR1 OS=Rattus norvegicus GN=Glyr1 PE=2 SV=1
trembl
ID A0A067K1Y0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16462 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53995: 263207-263533 , PASA_asmbl_53996: 263540-263691
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000684_250 0.0 - - PREDICTED: uncharacterized protein LOC105642172 [Jatropha curcas]
2 Hb_001329_140 0.0531227795 - - PREDICTED: zinc finger protein 598 [Jatropha curcas]
3 Hb_003168_110 0.0564118499 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: lysine-specific histone demethylase 1 homolog 1 [Jatropha curcas]
4 Hb_002235_300 0.057025236 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15280 isoform X1 [Jatropha curcas]
5 Hb_009767_080 0.0630588875 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
6 Hb_002253_080 0.0644973888 - - PREDICTED: phosphatidylinositol 4-kinase beta 1-like [Jatropha curcas]
7 Hb_002267_140 0.0656834397 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
8 Hb_004676_010 0.0682430832 - - PREDICTED: pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like [Jatropha curcas]
9 Hb_003494_020 0.0685257133 - - ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
10 Hb_002234_170 0.0700882374 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1 [Jatropha curcas]
11 Hb_002843_120 0.0712905019 - - PREDICTED: uncharacterized protein LOC105645113 isoform X1 [Jatropha curcas]
12 Hb_001322_130 0.0713511845 - - PREDICTED: putative glycerol-3-phosphate transporter 4 [Jatropha curcas]
13 Hb_001550_060 0.0723931347 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X4 [Jatropha curcas]
14 Hb_007747_040 0.0744598229 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Jatropha curcas]
15 Hb_000603_280 0.0753172483 - - PREDICTED: uncharacterized protein LOC105638082 [Jatropha curcas]
16 Hb_001767_140 0.0762843435 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
17 Hb_012395_140 0.0767338554 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
18 Hb_001004_060 0.0770741023 - - PREDICTED: uncharacterized protein LOC105630220 isoform X4 [Jatropha curcas]
19 Hb_003504_030 0.0778301085 - - PREDICTED: serine/threonine-protein phosphatase PP1-like isoform X2 [Jatropha curcas]
20 Hb_000977_120 0.0779793175 - - PREDICTED: sister chromatid cohesion 1 protein 4 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000684_250 Hb_000684_250 Hb_001329_140 Hb_001329_140 Hb_000684_250--Hb_001329_140 Hb_003168_110 Hb_003168_110 Hb_000684_250--Hb_003168_110 Hb_002235_300 Hb_002235_300 Hb_000684_250--Hb_002235_300 Hb_009767_080 Hb_009767_080 Hb_000684_250--Hb_009767_080 Hb_002253_080 Hb_002253_080 Hb_000684_250--Hb_002253_080 Hb_002267_140 Hb_002267_140 Hb_000684_250--Hb_002267_140 Hb_001329_140--Hb_003168_110 Hb_000803_260 Hb_000803_260 Hb_001329_140--Hb_000803_260 Hb_000037_190 Hb_000037_190 Hb_001329_140--Hb_000037_190 Hb_000457_260 Hb_000457_260 Hb_001329_140--Hb_000457_260 Hb_000590_050 Hb_000590_050 Hb_001329_140--Hb_000590_050 Hb_003494_020 Hb_003494_020 Hb_003168_110--Hb_003494_020 Hb_003168_110--Hb_000590_050 Hb_000009_560 Hb_000009_560 Hb_003168_110--Hb_000009_560 Hb_000890_060 Hb_000890_060 Hb_003168_110--Hb_000890_060 Hb_000977_120 Hb_000977_120 Hb_002235_300--Hb_000977_120 Hb_002615_090 Hb_002615_090 Hb_002235_300--Hb_002615_090 Hb_002235_300--Hb_002253_080 Hb_000025_320 Hb_000025_320 Hb_002235_300--Hb_000025_320 Hb_002235_300--Hb_002267_140 Hb_019430_020 Hb_019430_020 Hb_009767_080--Hb_019430_020 Hb_000890_050 Hb_000890_050 Hb_009767_080--Hb_000890_050 Hb_009898_010 Hb_009898_010 Hb_009767_080--Hb_009898_010 Hb_000321_150 Hb_000321_150 Hb_009767_080--Hb_000321_150 Hb_000069_470 Hb_000069_470 Hb_009767_080--Hb_000069_470 Hb_001322_130 Hb_001322_130 Hb_002253_080--Hb_001322_130 Hb_008253_030 Hb_008253_030 Hb_002253_080--Hb_008253_030 Hb_001767_140 Hb_001767_140 Hb_002253_080--Hb_001767_140 Hb_031042_050 Hb_031042_050 Hb_002253_080--Hb_031042_050 Hb_002253_080--Hb_002267_140 Hb_002253_080--Hb_002615_090 Hb_002267_140--Hb_008253_030 Hb_002267_140--Hb_001767_140 Hb_138596_010 Hb_138596_010 Hb_002267_140--Hb_138596_010 Hb_002276_240 Hb_002276_240 Hb_002267_140--Hb_002276_240 Hb_002843_120 Hb_002843_120 Hb_002267_140--Hb_002843_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.1494 16.0052 8.01378 9.16577 10.2554 15.5171
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.24939 6.95837 13.5292 9.87665 12.6362

CAGE analysis