Hb_009898_010

Information

Type transcription factor
Description TF Family: MYB
Location Contig9898: 5604-17115
Sequence    

Annotation

kegg
ID pop:POPTR_0010s22670g
description POPTRDRAFT_567580; hypothetical protein
nr
ID XP_012086506.1
description PREDICTED: uncharacterized protein LOC105645502 [Jatropha curcas]
swissprot
ID Q9Y618
description Nuclear receptor corepressor 2 OS=Homo sapiens GN=NCOR2 PE=1 SV=2
trembl
ID A0A067K1T6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23950 PE=4 SV=1
Gene Ontology
ID GO:0005634
description myb family transcription factor family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64703: 5711-15025
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009898_010 0.0 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105645502 [Jatropha curcas]
2 Hb_009767_080 0.0659686828 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
3 Hb_002780_010 0.0738725417 - - PREDICTED: uncharacterized protein LOC105639237 [Jatropha curcas]
4 Hb_002311_100 0.076468289 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 11-like [Jatropha curcas]
5 Hb_002316_160 0.0780228684 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640422 [Jatropha curcas]
6 Hb_005486_030 0.0786642773 transcription factor TF Family: PHD hypothetical protein POPTR_0017s10890g [Populus trichocarpa]
7 Hb_005656_040 0.081925846 desease resistance Gene Name: T2SE ATP-dependent RNA helicase, putative [Ricinus communis]
8 Hb_019430_020 0.0847824669 - - PREDICTED: uncharacterized protein LOC105641844 isoform X1 [Jatropha curcas]
9 Hb_000540_060 0.085989736 - - PREDICTED: uncharacterized protein LOC105628177 [Jatropha curcas]
10 Hb_000890_050 0.087738311 - - PREDICTED: uncharacterized protein LOC105631800 [Jatropha curcas]
11 Hb_000130_490 0.0880026571 - - PREDICTED: uncharacterized protein LOC105637408 isoform X2 [Jatropha curcas]
12 Hb_000046_190 0.0886316128 - - PREDICTED: uncharacterized protein LOC105647118 [Jatropha curcas]
13 Hb_000321_150 0.0901545838 - - PREDICTED: uncharacterized protein LOC105645596 isoform X1 [Jatropha curcas]
14 Hb_140627_020 0.0902279495 - - PREDICTED: uncharacterized protein LOC105637253 isoform X1 [Jatropha curcas]
15 Hb_000260_070 0.0904087312 - - kinase, putative [Ricinus communis]
16 Hb_000031_170 0.0919864762 - - PREDICTED: abnormal long morphology protein 1 isoform X1 [Jatropha curcas]
17 Hb_000672_040 0.0936151319 - - PREDICTED: ENHANCER OF AG-4 protein 2 [Jatropha curcas]
18 Hb_001967_030 0.0940207355 - - PREDICTED: uncharacterized protein LOC105633557 [Jatropha curcas]
19 Hb_000174_290 0.0947664383 - - PREDICTED: conserved oligomeric Golgi complex subunit 1 [Jatropha curcas]
20 Hb_000270_670 0.0957470053 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640420 [Jatropha curcas]

Gene co-expression network

sample Hb_009898_010 Hb_009898_010 Hb_009767_080 Hb_009767_080 Hb_009898_010--Hb_009767_080 Hb_002780_010 Hb_002780_010 Hb_009898_010--Hb_002780_010 Hb_002311_100 Hb_002311_100 Hb_009898_010--Hb_002311_100 Hb_002316_160 Hb_002316_160 Hb_009898_010--Hb_002316_160 Hb_005486_030 Hb_005486_030 Hb_009898_010--Hb_005486_030 Hb_005656_040 Hb_005656_040 Hb_009898_010--Hb_005656_040 Hb_019430_020 Hb_019430_020 Hb_009767_080--Hb_019430_020 Hb_000890_050 Hb_000890_050 Hb_009767_080--Hb_000890_050 Hb_000684_250 Hb_000684_250 Hb_009767_080--Hb_000684_250 Hb_000321_150 Hb_000321_150 Hb_009767_080--Hb_000321_150 Hb_000069_470 Hb_000069_470 Hb_009767_080--Hb_000069_470 Hb_002007_160 Hb_002007_160 Hb_002780_010--Hb_002007_160 Hb_002780_010--Hb_009767_080 Hb_002780_010--Hb_000321_150 Hb_000260_070 Hb_000260_070 Hb_002780_010--Hb_000260_070 Hb_001268_380 Hb_001268_380 Hb_002780_010--Hb_001268_380 Hb_002311_100--Hb_005656_040 Hb_000556_220 Hb_000556_220 Hb_002311_100--Hb_000556_220 Hb_000723_220 Hb_000723_220 Hb_002311_100--Hb_000723_220 Hb_000094_310 Hb_000094_310 Hb_002311_100--Hb_000094_310 Hb_000696_050 Hb_000696_050 Hb_002311_100--Hb_000696_050 Hb_000130_490 Hb_000130_490 Hb_002316_160--Hb_000130_490 Hb_002316_160--Hb_005486_030 Hb_001999_090 Hb_001999_090 Hb_002316_160--Hb_001999_090 Hb_006718_020 Hb_006718_020 Hb_002316_160--Hb_006718_020 Hb_001865_070 Hb_001865_070 Hb_002316_160--Hb_001865_070 Hb_005486_030--Hb_000130_490 Hb_000672_040 Hb_000672_040 Hb_005486_030--Hb_000672_040 Hb_005486_030--Hb_009767_080 Hb_008053_040 Hb_008053_040 Hb_005486_030--Hb_008053_040 Hb_001188_020 Hb_001188_020 Hb_005656_040--Hb_001188_020 Hb_000412_010 Hb_000412_010 Hb_005656_040--Hb_000412_010 Hb_001628_070 Hb_001628_070 Hb_005656_040--Hb_001628_070 Hb_005656_040--Hb_009767_080 Hb_000206_040 Hb_000206_040 Hb_005656_040--Hb_000206_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.1887 35.2473 6.98925 17.5496 20.1167 25.0212
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.726 10.0699 26.855 18.8001 29.1301

CAGE analysis