Hb_006718_020

Information

Type -
Description -
Location Contig6718: 4645-12700
Sequence    

Annotation

kegg
ID rcu:RCOM_0904580
description hypothetical protein
nr
ID XP_012091340.1
description PREDICTED: uncharacterized protein LOC105649330 isoform X2 [Jatropha curcas]
swissprot
ID Q54FL0
description Myb-like protein O OS=Dictyostelium discoideum GN=mybO PE=3 SV=1
trembl
ID A0A067JMM4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21215 PE=4 SV=1
Gene Ontology
ID GO:0003682
description homeodomain-like superfamily isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53462: 3922-4583 , PASA_asmbl_53463: 6541-6822 , PASA_asmbl_53464: 11012-12169
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006718_020 0.0 - - PREDICTED: uncharacterized protein LOC105649330 isoform X2 [Jatropha curcas]
2 Hb_002316_150 0.0608381503 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640420 [Jatropha curcas]
3 Hb_001999_090 0.0707356318 - - PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic [Jatropha curcas]
4 Hb_000270_670 0.0773861721 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640420 [Jatropha curcas]
5 Hb_002316_160 0.0787755706 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640422 [Jatropha curcas]
6 Hb_000130_490 0.0792460606 - - PREDICTED: uncharacterized protein LOC105637408 isoform X2 [Jatropha curcas]
7 Hb_007441_220 0.0792994035 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
8 Hb_004712_130 0.0810649291 - - PREDICTED: uncharacterized protein LOC105633074 [Jatropha curcas]
9 Hb_002235_040 0.0887945749 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230 [Jatropha curcas]
10 Hb_000866_120 0.0902147262 - - PREDICTED: mediator of RNA polymerase II transcription subunit 12 [Jatropha curcas]
11 Hb_000041_100 0.0914809246 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
12 Hb_000230_500 0.0937214307 - - PREDICTED: pentatricopeptide repeat-containing protein At5g19020, mitochondrial [Jatropha curcas]
13 Hb_000964_130 0.0939072074 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 30-like [Jatropha curcas]
14 Hb_002063_020 0.0946492378 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17140 [Jatropha curcas]
15 Hb_005188_020 0.0965626999 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02330 [Jatropha curcas]
16 Hb_009486_200 0.0968329207 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
17 Hb_000172_110 0.0979379359 - - -
18 Hb_006915_030 0.0985182453 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 8 [Jatropha curcas]
19 Hb_003371_090 0.0994689312 - - PREDICTED: uncharacterized protein LOC105650336 [Jatropha curcas]
20 Hb_027472_070 0.1003167502 - - PREDICTED: uncharacterized protein LOC105646172 [Jatropha curcas]

Gene co-expression network

sample Hb_006718_020 Hb_006718_020 Hb_002316_150 Hb_002316_150 Hb_006718_020--Hb_002316_150 Hb_001999_090 Hb_001999_090 Hb_006718_020--Hb_001999_090 Hb_000270_670 Hb_000270_670 Hb_006718_020--Hb_000270_670 Hb_002316_160 Hb_002316_160 Hb_006718_020--Hb_002316_160 Hb_000130_490 Hb_000130_490 Hb_006718_020--Hb_000130_490 Hb_007441_220 Hb_007441_220 Hb_006718_020--Hb_007441_220 Hb_002316_150--Hb_000270_670 Hb_002316_150--Hb_007441_220 Hb_000866_120 Hb_000866_120 Hb_002316_150--Hb_000866_120 Hb_000172_110 Hb_000172_110 Hb_002316_150--Hb_000172_110 Hb_000140_230 Hb_000140_230 Hb_002316_150--Hb_000140_230 Hb_002235_040 Hb_002235_040 Hb_001999_090--Hb_002235_040 Hb_004712_130 Hb_004712_130 Hb_001999_090--Hb_004712_130 Hb_001999_090--Hb_007441_220 Hb_001999_090--Hb_002316_160 Hb_027472_070 Hb_027472_070 Hb_001999_090--Hb_027472_070 Hb_000270_670--Hb_000172_110 Hb_000270_670--Hb_007441_220 Hb_000270_670--Hb_000866_120 Hb_000890_050 Hb_000890_050 Hb_000270_670--Hb_000890_050 Hb_004143_130 Hb_004143_130 Hb_000270_670--Hb_004143_130 Hb_002316_160--Hb_000130_490 Hb_005486_030 Hb_005486_030 Hb_002316_160--Hb_005486_030 Hb_009898_010 Hb_009898_010 Hb_002316_160--Hb_009898_010 Hb_001865_070 Hb_001865_070 Hb_002316_160--Hb_001865_070 Hb_000130_490--Hb_005486_030 Hb_009767_080 Hb_009767_080 Hb_000130_490--Hb_009767_080 Hb_011671_410 Hb_011671_410 Hb_000130_490--Hb_011671_410 Hb_001999_290 Hb_001999_290 Hb_000130_490--Hb_001999_290 Hb_000041_100 Hb_000041_100 Hb_007441_220--Hb_000041_100 Hb_001085_060 Hb_001085_060 Hb_007441_220--Hb_001085_060 Hb_000245_040 Hb_000245_040 Hb_007441_220--Hb_000245_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.01597 5.97327 2.624 2.76924 2.75668 4.40622
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.32666 3.37701 8.99267 4.24937 5.83307

CAGE analysis