Hb_011671_410

Information

Type transcription factor
Description TF Family: SET
Location Contig11671: 317847-320409
Sequence    

Annotation

kegg
ID rcu:RCOM_1502480
description histone-lysine n-methyltransferase, suvh, putative (EC:2.1.1.43)
nr
ID XP_002511029.1
description histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
swissprot
ID O82175
description Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 OS=Arabidopsis thaliana GN=SUVH5 PE=1 SV=1
trembl
ID B9RA04
description Histone-lysine n-methyltransferase, suvh, putative OS=Ricinus communis GN=RCOM_1502480 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05180: 317843-323466
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011671_410 0.0 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
2 Hb_000170_130 0.0634619083 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH2 [Jatropha curcas]
3 Hb_005736_020 0.0666783733 - - hypothetical protein POPTR_0005s20940g [Populus trichocarpa]
4 Hb_000204_120 0.0709936539 - - PREDICTED: uncharacterized protein LOC105639239 [Jatropha curcas]
5 Hb_000672_040 0.071856519 - - PREDICTED: ENHANCER OF AG-4 protein 2 [Jatropha curcas]
6 Hb_062226_070 0.078388181 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X1 [Jatropha curcas]
7 Hb_001999_290 0.0809467408 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Jatropha curcas]
8 Hb_000130_490 0.081144838 - - PREDICTED: uncharacterized protein LOC105637408 isoform X2 [Jatropha curcas]
9 Hb_005486_030 0.0817310876 transcription factor TF Family: PHD hypothetical protein POPTR_0017s10890g [Populus trichocarpa]
10 Hb_002686_090 0.0817842597 - - PREDICTED: pentatricopeptide repeat-containing protein At4g13650 [Jatropha curcas]
11 Hb_000574_400 0.0818083604 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g15930 [Jatropha curcas]
12 Hb_000808_030 0.0824867767 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105647456 [Jatropha curcas]
13 Hb_001405_070 0.082678369 - - PREDICTED: pentatricopeptide repeat-containing protein At3g23020 [Jatropha curcas]
14 Hb_001865_070 0.0862245544 - - PREDICTED: uncharacterized protein LOC105647937 isoform X1 [Jatropha curcas]
15 Hb_000640_040 0.0876012285 - - PREDICTED: bromodomain and WD repeat-containing protein 1 isoform X2 [Jatropha curcas]
16 Hb_002542_110 0.0876942443 - - PREDICTED: uncharacterized protein LOC105642479 [Jatropha curcas]
17 Hb_007441_160 0.0900659937 - - RNA binding protein, putative [Ricinus communis]
18 Hb_001304_110 0.0910375543 transcription factor TF Family: WRKY WRKY protein [Hevea brasiliensis]
19 Hb_002316_160 0.0920895971 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640422 [Jatropha curcas]
20 Hb_012506_040 0.092801777 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105637346 [Jatropha curcas]

Gene co-expression network

sample Hb_011671_410 Hb_011671_410 Hb_000170_130 Hb_000170_130 Hb_011671_410--Hb_000170_130 Hb_005736_020 Hb_005736_020 Hb_011671_410--Hb_005736_020 Hb_000204_120 Hb_000204_120 Hb_011671_410--Hb_000204_120 Hb_000672_040 Hb_000672_040 Hb_011671_410--Hb_000672_040 Hb_062226_070 Hb_062226_070 Hb_011671_410--Hb_062226_070 Hb_001999_290 Hb_001999_290 Hb_011671_410--Hb_001999_290 Hb_012506_040 Hb_012506_040 Hb_000170_130--Hb_012506_040 Hb_002686_090 Hb_002686_090 Hb_000170_130--Hb_002686_090 Hb_002542_110 Hb_002542_110 Hb_000170_130--Hb_002542_110 Hb_006816_370 Hb_006816_370 Hb_000170_130--Hb_006816_370 Hb_000170_130--Hb_062226_070 Hb_005686_090 Hb_005686_090 Hb_005736_020--Hb_005686_090 Hb_001157_240 Hb_001157_240 Hb_005736_020--Hb_001157_240 Hb_005736_020--Hb_001999_290 Hb_001004_060 Hb_001004_060 Hb_005736_020--Hb_001004_060 Hb_001008_120 Hb_001008_120 Hb_005736_020--Hb_001008_120 Hb_005736_020--Hb_000204_120 Hb_000204_120--Hb_002686_090 Hb_001865_070 Hb_001865_070 Hb_000204_120--Hb_001865_070 Hb_000388_090 Hb_000388_090 Hb_000204_120--Hb_000388_090 Hb_000204_120--Hb_000672_040 Hb_005186_040 Hb_005186_040 Hb_000672_040--Hb_005186_040 Hb_007441_160 Hb_007441_160 Hb_000672_040--Hb_007441_160 Hb_000672_040--Hb_005736_020 Hb_001227_080 Hb_001227_080 Hb_000672_040--Hb_001227_080 Hb_005486_030 Hb_005486_030 Hb_000672_040--Hb_005486_030 Hb_003494_020 Hb_003494_020 Hb_062226_070--Hb_003494_020 Hb_000028_130 Hb_000028_130 Hb_062226_070--Hb_000028_130 Hb_000174_270 Hb_000174_270 Hb_062226_070--Hb_000174_270 Hb_004079_060 Hb_004079_060 Hb_062226_070--Hb_004079_060 Hb_062226_070--Hb_001999_290 Hb_005582_040 Hb_005582_040 Hb_062226_070--Hb_005582_040 Hb_001999_290--Hb_001157_240 Hb_001999_290--Hb_000174_270 Hb_001999_290--Hb_004079_060 Hb_001999_290--Hb_001004_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.675452 1.74212 0.642746 0.856721 0.748104 1.13399
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.905299 0.993475 1.49092 0.910251 2.05692

CAGE analysis