Hb_000028_130

Information

Type -
Description -
Location Contig28: 107695-125207
Sequence    

Annotation

kegg
ID rcu:RCOM_0569520
description protein binding protein, putative
nr
ID XP_012086259.1
description PREDICTED: uncharacterized protein LOC105645303 isoform X1 [Jatropha curcas]
swissprot
ID Q6P4K6
description Serine/threonine-protein kinase 11-interacting protein OS=Xenopus tropicalis GN=stk11ip PE=2 SV=1
trembl
ID B9SXS1
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_0569520 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29179: 111273-125089 , PASA_asmbl_29180: 112961-113246
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000028_130 0.0 - - PREDICTED: uncharacterized protein LOC105645303 isoform X1 [Jatropha curcas]
2 Hb_031042_050 0.044850929 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
3 Hb_001635_120 0.0492621597 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
4 Hb_000017_220 0.0495647802 - - PREDICTED: uncharacterized protein LOC105645768 [Jatropha curcas]
5 Hb_001716_020 0.0520853981 - - hydrolase, putative [Ricinus communis]
6 Hb_001473_110 0.0525714953 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
7 Hb_003494_020 0.0544663364 - - ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
8 Hb_000174_270 0.0568055289 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X1 [Jatropha curcas]
9 Hb_062226_070 0.0593066179 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X1 [Jatropha curcas]
10 Hb_004030_080 0.0596725069 - - hypothetical protein JCGZ_25110 [Jatropha curcas]
11 Hb_002205_250 0.0628302264 - - PREDICTED: probable inactive serine/threonine-protein kinase scy1 isoform X1 [Jatropha curcas]
12 Hb_001488_180 0.0653364759 - - PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]
13 Hb_005582_040 0.06630787 - - PREDICTED: regulator of nonsense transcripts 1 homolog [Jatropha curcas]
14 Hb_002890_130 0.0683247134 - - tip120, putative [Ricinus communis]
15 Hb_004916_010 0.0689966335 - - PREDICTED: uncharacterized protein LOC105631086 [Jatropha curcas]
16 Hb_002234_090 0.0701903162 - - PREDICTED: probable transcriptional regulator SLK2 [Jatropha curcas]
17 Hb_000479_070 0.0704796857 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
18 Hb_000614_210 0.070966609 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-1-like isoform X1 [Jatropha curcas]
19 Hb_000347_400 0.0722075706 - - PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]
20 Hb_000069_470 0.0723154762 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000028_130 Hb_000028_130 Hb_031042_050 Hb_031042_050 Hb_000028_130--Hb_031042_050 Hb_001635_120 Hb_001635_120 Hb_000028_130--Hb_001635_120 Hb_000017_220 Hb_000017_220 Hb_000028_130--Hb_000017_220 Hb_001716_020 Hb_001716_020 Hb_000028_130--Hb_001716_020 Hb_001473_110 Hb_001473_110 Hb_000028_130--Hb_001473_110 Hb_003494_020 Hb_003494_020 Hb_000028_130--Hb_003494_020 Hb_001322_130 Hb_001322_130 Hb_031042_050--Hb_001322_130 Hb_000069_470 Hb_000069_470 Hb_031042_050--Hb_000069_470 Hb_002253_080 Hb_002253_080 Hb_031042_050--Hb_002253_080 Hb_001545_150 Hb_001545_150 Hb_031042_050--Hb_001545_150 Hb_004410_120 Hb_004410_120 Hb_031042_050--Hb_004410_120 Hb_001635_120--Hb_000017_220 Hb_005582_040 Hb_005582_040 Hb_001635_120--Hb_005582_040 Hb_000174_270 Hb_000174_270 Hb_001635_120--Hb_000174_270 Hb_001999_290 Hb_001999_290 Hb_001635_120--Hb_001999_290 Hb_001635_120--Hb_001473_110 Hb_000025_280 Hb_000025_280 Hb_000017_220--Hb_000025_280 Hb_000017_220--Hb_001473_110 Hb_004705_020 Hb_004705_020 Hb_000017_220--Hb_004705_020 Hb_001488_180 Hb_001488_180 Hb_000017_220--Hb_001488_180 Hb_002492_010 Hb_002492_010 Hb_001716_020--Hb_002492_010 Hb_001481_060 Hb_001481_060 Hb_001716_020--Hb_001481_060 Hb_105105_010 Hb_105105_010 Hb_001716_020--Hb_105105_010 Hb_002205_250 Hb_002205_250 Hb_001716_020--Hb_002205_250 Hb_000029_060 Hb_000029_060 Hb_001716_020--Hb_000029_060 Hb_000479_070 Hb_000479_070 Hb_001473_110--Hb_000479_070 Hb_001473_110--Hb_001488_180 Hb_001473_110--Hb_001545_150 Hb_000347_390 Hb_000347_390 Hb_001473_110--Hb_000347_390 Hb_000347_400 Hb_000347_400 Hb_001473_110--Hb_000347_400 Hb_003494_020--Hb_000174_270 Hb_002234_170 Hb_002234_170 Hb_003494_020--Hb_002234_170 Hb_000258_160 Hb_000258_160 Hb_003494_020--Hb_000258_160 Hb_062226_070 Hb_062226_070 Hb_003494_020--Hb_062226_070 Hb_002818_030 Hb_002818_030 Hb_003494_020--Hb_002818_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.63345 9.09336 4.61528 6.59585 4.59623 5.49362
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.68382 4.40775 5.80908 5.95867 7.29446

CAGE analysis