Hb_000347_400

Information

Type -
Description -
Location Contig347: 411346-416119
Sequence    

Annotation

kegg
ID pop:POPTR_0001s16830g
description POPTRDRAFT_180724; hypothetical protein
nr
ID XP_012068876.1
description PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]
swissprot
ID Q9SYH1
description Probable GTP diphosphokinase RSH3, chloroplastic OS=Arabidopsis thaliana GN=RSH3 PE=2 SV=1
trembl
ID A0A067L885
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24694 PE=4 SV=1
Gene Ontology
ID GO:0015969
description probable gtp diphosphokinase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36238: 411086-416192
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000347_400 0.0 - - PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]
2 Hb_001473_110 0.0613495464 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
3 Hb_000347_390 0.0639659745 - - PREDICTED: exportin-T [Jatropha curcas]
4 Hb_002234_090 0.0674304567 - - PREDICTED: probable transcriptional regulator SLK2 [Jatropha curcas]
5 Hb_004916_010 0.0682680754 - - PREDICTED: uncharacterized protein LOC105631086 [Jatropha curcas]
6 Hb_003906_200 0.0706612184 - - PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
7 Hb_022425_060 0.071207591 - - PREDICTED: protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1 [Jatropha curcas]
8 Hb_005551_020 0.0720578873 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
9 Hb_000028_130 0.0722075706 - - PREDICTED: uncharacterized protein LOC105645303 isoform X1 [Jatropha curcas]
10 Hb_020178_040 0.0732243001 - - conserved hypothetical protein [Ricinus communis]
11 Hb_066920_030 0.073599009 - - PREDICTED: adagio protein 1 [Jatropha curcas]
12 Hb_000029_060 0.0740650117 - - PREDICTED: mRNA-decapping enzyme-like protein [Jatropha curcas]
13 Hb_001716_020 0.074262858 - - hydrolase, putative [Ricinus communis]
14 Hb_004030_080 0.0750129529 - - hypothetical protein JCGZ_25110 [Jatropha curcas]
15 Hb_010407_080 0.0753573456 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT35 isoform X1 [Jatropha curcas]
16 Hb_007839_020 0.0783469198 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000479_070 0.0784995248 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
18 Hb_001723_100 0.0788144221 - - PREDICTED: uncharacterized protein LOC105643601 isoform X1 [Jatropha curcas]
19 Hb_002272_030 0.0789849654 - - PREDICTED: cation/calcium exchanger 5 [Jatropha curcas]
20 Hb_000024_040 0.0790850871 - - PREDICTED: ALG-2 interacting protein X [Jatropha curcas]

Gene co-expression network

sample Hb_000347_400 Hb_000347_400 Hb_001473_110 Hb_001473_110 Hb_000347_400--Hb_001473_110 Hb_000347_390 Hb_000347_390 Hb_000347_400--Hb_000347_390 Hb_002234_090 Hb_002234_090 Hb_000347_400--Hb_002234_090 Hb_004916_010 Hb_004916_010 Hb_000347_400--Hb_004916_010 Hb_003906_200 Hb_003906_200 Hb_000347_400--Hb_003906_200 Hb_022425_060 Hb_022425_060 Hb_000347_400--Hb_022425_060 Hb_000479_070 Hb_000479_070 Hb_001473_110--Hb_000479_070 Hb_000028_130 Hb_000028_130 Hb_001473_110--Hb_000028_130 Hb_001488_180 Hb_001488_180 Hb_001473_110--Hb_001488_180 Hb_001545_150 Hb_001545_150 Hb_001473_110--Hb_001545_150 Hb_001473_110--Hb_000347_390 Hb_000024_040 Hb_000024_040 Hb_000347_390--Hb_000024_040 Hb_003768_050 Hb_003768_050 Hb_000347_390--Hb_003768_050 Hb_005551_020 Hb_005551_020 Hb_000347_390--Hb_005551_020 Hb_000017_220 Hb_000017_220 Hb_000347_390--Hb_000017_220 Hb_010712_050 Hb_010712_050 Hb_002234_090--Hb_010712_050 Hb_002675_130 Hb_002675_130 Hb_002234_090--Hb_002675_130 Hb_002234_090--Hb_004916_010 Hb_003835_070 Hb_003835_070 Hb_002234_090--Hb_003835_070 Hb_002234_090--Hb_003768_050 Hb_003544_060 Hb_003544_060 Hb_002234_090--Hb_003544_060 Hb_002818_030 Hb_002818_030 Hb_004916_010--Hb_002818_030 Hb_003849_110 Hb_003849_110 Hb_004916_010--Hb_003849_110 Hb_000029_060 Hb_000029_060 Hb_004916_010--Hb_000029_060 Hb_000015_170 Hb_000015_170 Hb_004916_010--Hb_000015_170 Hb_001716_020 Hb_001716_020 Hb_004916_010--Hb_001716_020 Hb_112198_010 Hb_112198_010 Hb_003906_200--Hb_112198_010 Hb_002492_010 Hb_002492_010 Hb_003906_200--Hb_002492_010 Hb_004143_100 Hb_004143_100 Hb_003906_200--Hb_004143_100 Hb_001473_160 Hb_001473_160 Hb_003906_200--Hb_001473_160 Hb_000072_120 Hb_000072_120 Hb_003906_200--Hb_000072_120 Hb_003906_200--Hb_003544_060 Hb_001828_170 Hb_001828_170 Hb_022425_060--Hb_001828_170 Hb_020805_150 Hb_020805_150 Hb_022425_060--Hb_020805_150 Hb_001329_200 Hb_001329_200 Hb_022425_060--Hb_001329_200 Hb_010407_080 Hb_010407_080 Hb_022425_060--Hb_010407_080 Hb_007839_020 Hb_007839_020 Hb_022425_060--Hb_007839_020 Hb_003918_030 Hb_003918_030 Hb_022425_060--Hb_003918_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.53072 26.396 13.9388 18.365 8.41858 11.5628
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.1075 10.1931 16.6227 13.6607 14.7235

CAGE analysis