Hb_000015_170

Information

Type -
Description -
Location Contig15: 144460-145962
Sequence    

Annotation

kegg
ID rcu:RCOM_0464240
description hypothetical protein
nr
ID XP_002528431.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SR12
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0464240 PE=4 SV=1
Gene Ontology
ID GO:0009941
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12509: 144183-146879 , PASA_asmbl_12510: 146586-146757
cDNA
(Sanger)
(ID:Location)		 048_A09.ab1: 145556-146879

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000015_170 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000120_130 0.0636219887 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 66 [Jatropha curcas]
3 Hb_004916_010 0.0644974281 - - PREDICTED: uncharacterized protein LOC105631086 [Jatropha curcas]
4 Hb_006275_020 0.0658788912 - - PREDICTED: VIN3-like protein 2 [Jatropha curcas]
5 Hb_002157_080 0.0738629663 - - PREDICTED: uncharacterized protein LOC105628780 isoform X2 [Jatropha curcas]
6 Hb_000061_030 0.0802154181 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065 [Jatropha curcas]
7 Hb_000025_730 0.0802190569 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
8 Hb_002783_040 0.0807963444 transcription factor TF Family: IWS1 -
9 Hb_001473_110 0.0838027703 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
10 Hb_000861_080 0.084145758 - - PREDICTED: protein ELC-like [Jatropha curcas]
11 Hb_030827_020 0.0846475254 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
12 Hb_000442_010 0.0853645116 - - hypothetical protein POPTR_0010s19060g [Populus trichocarpa]
13 Hb_002329_020 0.0855318566 - - PREDICTED: uncharacterized protein LOC105648015 [Jatropha curcas]
14 Hb_000479_070 0.0858115898 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
15 Hb_002818_030 0.0866713393 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
16 Hb_001717_010 0.0879841359 - - F-box and wd40 domain protein, putative [Ricinus communis]
17 Hb_002798_070 0.0885533362 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 [Jatropha curcas]
18 Hb_005725_210 0.0891789029 - - PREDICTED: RNA-binding protein 1 [Jatropha curcas]
19 Hb_001279_120 0.0908801722 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Jatropha curcas]
20 Hb_002263_040 0.0912497858 - - carbon catabolite repressor protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000015_170 Hb_000015_170 Hb_000120_130 Hb_000120_130 Hb_000015_170--Hb_000120_130 Hb_004916_010 Hb_004916_010 Hb_000015_170--Hb_004916_010 Hb_006275_020 Hb_006275_020 Hb_000015_170--Hb_006275_020 Hb_002157_080 Hb_002157_080 Hb_000015_170--Hb_002157_080 Hb_000061_030 Hb_000061_030 Hb_000015_170--Hb_000061_030 Hb_000025_730 Hb_000025_730 Hb_000015_170--Hb_000025_730 Hb_000120_130--Hb_006275_020 Hb_000861_080 Hb_000861_080 Hb_000120_130--Hb_000861_080 Hb_000808_030 Hb_000808_030 Hb_000120_130--Hb_000808_030 Hb_003747_100 Hb_003747_100 Hb_000120_130--Hb_003747_100 Hb_002783_040 Hb_002783_040 Hb_000120_130--Hb_002783_040 Hb_002818_030 Hb_002818_030 Hb_004916_010--Hb_002818_030 Hb_003849_110 Hb_003849_110 Hb_004916_010--Hb_003849_110 Hb_000029_060 Hb_000029_060 Hb_004916_010--Hb_000029_060 Hb_002234_090 Hb_002234_090 Hb_004916_010--Hb_002234_090 Hb_001716_020 Hb_001716_020 Hb_004916_010--Hb_001716_020 Hb_001500_060 Hb_001500_060 Hb_006275_020--Hb_001500_060 Hb_000103_340 Hb_000103_340 Hb_006275_020--Hb_000103_340 Hb_006275_020--Hb_000061_030 Hb_001761_120 Hb_001761_120 Hb_006275_020--Hb_001761_120 Hb_002542_110 Hb_002542_110 Hb_002157_080--Hb_002542_110 Hb_001488_180 Hb_001488_180 Hb_002157_080--Hb_001488_180 Hb_009658_030 Hb_009658_030 Hb_002157_080--Hb_009658_030 Hb_001473_110 Hb_001473_110 Hb_002157_080--Hb_001473_110 Hb_000347_400 Hb_000347_400 Hb_002157_080--Hb_000347_400 Hb_002329_020 Hb_002329_020 Hb_000061_030--Hb_002329_020 Hb_000061_030--Hb_002783_040 Hb_002267_140 Hb_002267_140 Hb_000061_030--Hb_002267_140 Hb_002263_040 Hb_002263_040 Hb_000061_030--Hb_002263_040 Hb_002843_120 Hb_002843_120 Hb_000061_030--Hb_002843_120 Hb_002073_200 Hb_002073_200 Hb_000025_730--Hb_002073_200 Hb_024621_040 Hb_024621_040 Hb_000025_730--Hb_024621_040 Hb_000025_730--Hb_003849_110 Hb_000172_430 Hb_000172_430 Hb_000025_730--Hb_000172_430 Hb_000069_310 Hb_000069_310 Hb_000025_730--Hb_000069_310 Hb_162275_050 Hb_162275_050 Hb_000025_730--Hb_162275_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.8061 53.3817 28.4857 26.5977 16.5672 22.6926
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.0994 25.885 32.5624 16.584 30.8738

CAGE analysis